Gene : Medtr3g107660 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0546//KOG0865//KOG0879//KOG0880 - HSP90 co-chaperone CPR7/Cyclophilin // Cyclophilin type peptidyl-prolyl cis-trans isomerase // U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase // Peptidyl-prolyl cis-trans isomerase Description:  peptidyl-prolyl cis-trans isomerase
Genomic Order:  5962 Name:  ? Medtr3g107660
Secondary Identifier:  ? PAC:31059415
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g107660 0.5kb upstream 0.5kb upstream 8448 true chr3: 49648489-49656936 Medicago truncatula
Medtr3g107660 0.5kb upstream 0.5kb upstream 500 false chr3: 49656437-49656936 Medicago truncatula
Medtr3g107660 0.5kb downstream 0.5kb downstream 8448 true chr3: 49647989-49656436 Medicago truncatula
Medtr3g107660 0.5kb downstream 0.5kb downstream 500 false chr3: 49647989-49648488 Medicago truncatula
Medtr3g107660 1.0kb upstream 1.0kb upstream 8948 true chr3: 49648489-49657436 Medicago truncatula
Medtr3g107660 1.0kb upstream 1.0kb upstream 1000 false chr3: 49656437-49657436 Medicago truncatula
Medtr3g107660 1.0kb downstream 1.0kb downstream 8948 true chr3: 49647489-49656436 Medicago truncatula
Medtr3g107660 1.0kb downstream 1.0kb downstream 1000 false chr3: 49647489-49648488 Medicago truncatula
Medtr3g107660 2.0kb upstream 2.0kb upstream 9948 true chr3: 49648489-49658436 Medicago truncatula
Medtr3g107660 2.0kb upstream 2.0kb upstream 2000 false chr3: 49656437-49658436 Medicago truncatula
Medtr3g107660 2.0kb downstream 2.0kb downstream 9948 true chr3: 49646489-49656436 Medicago truncatula
Medtr3g107660 2.0kb downstream 2.0kb downstream 2000 false chr3: 49646489-49648488 Medicago truncatula
Medtr3g107660 5.0kb upstream 5.0kb upstream 12948 true chr3: 49648489-49661436 Medicago truncatula
Medtr3g107660 5.0kb upstream 5.0kb upstream 5000 false chr3: 49656437-49661436 Medicago truncatula
Medtr3g107660 5.0kb downstream 5.0kb downstream 12948 true chr3: 49643489-49656436 Medicago truncatula
Medtr3g107660 5.0kb downstream 5.0kb downstream 5000 false chr3: 49643489-49648488 Medicago truncatula
Medtr3g107660 10.0kb upstream 10.0kb upstream 17948 true chr3: 49648489-49666436 Medicago truncatula
Medtr3g107660 10.0kb upstream 10.0kb upstream 10000 false chr3: 49656437-49666436 Medicago truncatula
Medtr3g107660 10.0kb downstream 10.0kb downstream 17948 true chr3: 49638489-49656436 Medicago truncatula
Medtr3g107660 10.0kb downstream 10.0kb downstream 10000 false chr3: 49638489-49648488 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040927 5273 Angiosperm View MSA
122315223 5265 Fabidae View MSA
124061433 5270 Rosid View MSA
123740248 5271 Pentapetalae View MSA
122791283 5272 Eudicot View MSA
123428973 5275 Viridiplantae View MSA
121347265 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.488        
cufflinks 3.5        
cufflinks 3.83        
cufflinks 1.671        
cufflinks 5.986       High
cufflinks 1.032       Low
cufflinks 2.39        
cufflinks 3.394        
cufflinks 3.098        

0 Strain