Gene : Medtr4g013100 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR10996//PTHR10996:SF139 - 2-HYDROXYACID DEHYDROGENASE-RELATED Description:  D-glycerate dehydrogenase/hydroxypyruvate reductase
Genomic Order:  471 Name:  ? Medtr4g013100
Secondary Identifier:  ? PAC:31108977
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5049 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g013100 0.5kb upstream 0.5kb upstream 3622 true chr4: 3522270-3525891 Medicago truncatula
Medtr4g013100 0.5kb upstream 0.5kb upstream 500 false chr4: 3525392-3525891 Medicago truncatula
Medtr4g013100 0.5kb downstream 0.5kb downstream 3622 true chr4: 3521770-3525391 Medicago truncatula
Medtr4g013100 0.5kb downstream 0.5kb downstream 500 false chr4: 3521770-3522269 Medicago truncatula
Medtr4g013100 1.0kb upstream 1.0kb upstream 4122 true chr4: 3522270-3526391 Medicago truncatula
Medtr4g013100 1.0kb upstream 1.0kb upstream 1000 false chr4: 3525392-3526391 Medicago truncatula
Medtr4g013100 1.0kb downstream 1.0kb downstream 4122 true chr4: 3521270-3525391 Medicago truncatula
Medtr4g013100 1.0kb downstream 1.0kb downstream 1000 false chr4: 3521270-3522269 Medicago truncatula
Medtr4g013100 2.0kb upstream 2.0kb upstream 5122 true chr4: 3522270-3527391 Medicago truncatula
Medtr4g013100 2.0kb upstream 2.0kb upstream 2000 false chr4: 3525392-3527391 Medicago truncatula
Medtr4g013100 2.0kb downstream 2.0kb downstream 5122 true chr4: 3520270-3525391 Medicago truncatula
Medtr4g013100 2.0kb downstream 2.0kb downstream 2000 false chr4: 3520270-3522269 Medicago truncatula
Medtr4g013100 5.0kb upstream 5.0kb upstream 8122 true chr4: 3522270-3530391 Medicago truncatula
Medtr4g013100 5.0kb upstream 5.0kb upstream 5000 false chr4: 3525392-3530391 Medicago truncatula
Medtr4g013100 5.0kb downstream 5.0kb downstream 8122 true chr4: 3517270-3525391 Medicago truncatula
Medtr4g013100 5.0kb downstream 5.0kb downstream 5000 false chr4: 3517270-3522269 Medicago truncatula
Medtr4g013100 10.0kb upstream 10.0kb upstream 13122 true chr4: 3522270-3535391 Medicago truncatula
Medtr4g013100 10.0kb upstream 10.0kb upstream 10000 false chr4: 3525392-3535391 Medicago truncatula
Medtr4g013100 10.0kb downstream 10.0kb downstream 13122 true chr4: 3512270-3525391 Medicago truncatula
Medtr4g013100 10.0kb downstream 10.0kb downstream 10000 false chr4: 3512270-3522269 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304253 5265 Fabidae View MSA
124066830 5270 Rosid View MSA
123749177 5271 Pentapetalae View MSA
122790806 5272 Eudicot View MSA
122049787 5273 Angiosperm View MSA
121349350 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.414     High  
cufflinks 16.568     High  
cufflinks 19.19     High High
cufflinks 12.739     High  
cufflinks 18.643     High High
cufflinks 6.801       Low
cufflinks 10.004     High  
cufflinks 16.328     High  
cufflinks 11.524     High  

0 Strain