Gene : Medtr4g011980 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12952 - SYS1 Description:  integral membrane protein S (TGN-related)
Genomic Order:  422 Name:  ? Medtr4g011980
Secondary Identifier:  ? PAC:31106683
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g011980 0.5kb upstream 0.5kb upstream 3440 true chr4: 3180193-3183632 Medicago truncatula
Medtr4g011980 0.5kb upstream 0.5kb upstream 500 false chr4: 3183133-3183632 Medicago truncatula
Medtr4g011980 0.5kb downstream 0.5kb downstream 3440 true chr4: 3179693-3183132 Medicago truncatula
Medtr4g011980 0.5kb downstream 0.5kb downstream 500 false chr4: 3179693-3180192 Medicago truncatula
Medtr4g011980 1.0kb upstream 1.0kb upstream 3940 true chr4: 3180193-3184132 Medicago truncatula
Medtr4g011980 1.0kb upstream 1.0kb upstream 1000 false chr4: 3183133-3184132 Medicago truncatula
Medtr4g011980 1.0kb downstream 1.0kb downstream 3940 true chr4: 3179193-3183132 Medicago truncatula
Medtr4g011980 1.0kb downstream 1.0kb downstream 1000 false chr4: 3179193-3180192 Medicago truncatula
Medtr4g011980 2.0kb upstream 2.0kb upstream 4940 true chr4: 3180193-3185132 Medicago truncatula
Medtr4g011980 2.0kb upstream 2.0kb upstream 2000 false chr4: 3183133-3185132 Medicago truncatula
Medtr4g011980 2.0kb downstream 2.0kb downstream 4940 true chr4: 3178193-3183132 Medicago truncatula
Medtr4g011980 2.0kb downstream 2.0kb downstream 2000 false chr4: 3178193-3180192 Medicago truncatula
Medtr4g011980 5.0kb upstream 5.0kb upstream 7940 true chr4: 3180193-3188132 Medicago truncatula
Medtr4g011980 5.0kb upstream 5.0kb upstream 5000 false chr4: 3183133-3188132 Medicago truncatula
Medtr4g011980 5.0kb downstream 5.0kb downstream 7940 true chr4: 3175193-3183132 Medicago truncatula
Medtr4g011980 5.0kb downstream 5.0kb downstream 5000 false chr4: 3175193-3180192 Medicago truncatula
Medtr4g011980 10.0kb upstream 10.0kb upstream 12940 true chr4: 3180193-3193132 Medicago truncatula
Medtr4g011980 10.0kb upstream 10.0kb upstream 10000 false chr4: 3183133-3193132 Medicago truncatula
Medtr4g011980 10.0kb downstream 10.0kb downstream 12940 true chr4: 3170193-3183132 Medicago truncatula
Medtr4g011980 10.0kb downstream 10.0kb downstream 10000 false chr4: 3170193-3180192 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029063 5273 Angiosperm View MSA
122308545 5265 Fabidae View MSA
124068023 5270 Rosid View MSA
123738308 5271 Pentapetalae View MSA
122789569 5272 Eudicot View MSA
121345746 5274 Embryophyte View MSA
123428394 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.939        
cufflinks 4.422        
cufflinks 4.653        
cufflinks 2.501        
cufflinks 5.056        
cufflinks 0.983       Low
cufflinks 5.222        
cufflinks 4.159        
cufflinks 4.227        

0 Strain