Gene : Medtr4g005070 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10366//PTHR10366:SF343 - NAD DEPENDENT EPIMERASE/DEHYDRATASE Description:  high chlorophyll fluorescence phenotype 173 protein
Genomic Order:  2 Name:  ? Medtr4g005070
Secondary Identifier:  ? PAC:31114218
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g005070 0.5kb upstream 0.5kb upstream 7061 true chr4: 39784-46844 Medicago truncatula
Medtr4g005070 0.5kb upstream 0.5kb upstream 500 false chr4: 39784-40283 Medicago truncatula
Medtr4g005070 0.5kb downstream 0.5kb downstream 7061 true chr4: 40284-47344 Medicago truncatula
Medtr4g005070 0.5kb downstream 0.5kb downstream 500 false chr4: 46845-47344 Medicago truncatula
Medtr4g005070 1.0kb upstream 1.0kb upstream 7561 true chr4: 39284-46844 Medicago truncatula
Medtr4g005070 1.0kb upstream 1.0kb upstream 1000 false chr4: 39284-40283 Medicago truncatula
Medtr4g005070 1.0kb downstream 1.0kb downstream 7561 true chr4: 40284-47844 Medicago truncatula
Medtr4g005070 1.0kb downstream 1.0kb downstream 1000 false chr4: 46845-47844 Medicago truncatula
Medtr4g005070 2.0kb upstream 2.0kb upstream 8561 true chr4: 38284-46844 Medicago truncatula
Medtr4g005070 2.0kb upstream 2.0kb upstream 2000 false chr4: 38284-40283 Medicago truncatula
Medtr4g005070 2.0kb downstream 2.0kb downstream 8561 true chr4: 40284-48844 Medicago truncatula
Medtr4g005070 2.0kb downstream 2.0kb downstream 2000 false chr4: 46845-48844 Medicago truncatula
Medtr4g005070 5.0kb upstream 5.0kb upstream 11561 true chr4: 35284-46844 Medicago truncatula
Medtr4g005070 5.0kb upstream 5.0kb upstream 5000 false chr4: 35284-40283 Medicago truncatula
Medtr4g005070 5.0kb downstream 5.0kb downstream 11561 true chr4: 40284-51844 Medicago truncatula
Medtr4g005070 5.0kb downstream 5.0kb downstream 5000 false chr4: 46845-51844 Medicago truncatula
Medtr4g005070 10.0kb upstream 10.0kb upstream 16561 true chr4: 30284-46844 Medicago truncatula
Medtr4g005070 10.0kb upstream 10.0kb upstream 10000 false chr4: 30284-40283 Medicago truncatula
Medtr4g005070 10.0kb downstream 10.0kb downstream 16561 true chr4: 40284-56844 Medicago truncatula
Medtr4g005070 10.0kb downstream 10.0kb downstream 10000 false chr4: 46845-56844 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306443 5265 Fabidae View MSA
124060991 5270 Rosid View MSA
123739581 5271 Pentapetalae View MSA
122792894 5272 Eudicot View MSA
122046159 5273 Angiosperm View MSA
121349944 5274 Embryophyte View MSA
123424676 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.707        
cufflinks 8.733       High
cufflinks 5.941        
cufflinks 0.94        
cufflinks 4.446        
cufflinks 0.235       Low
cufflinks 0.304       Low
cufflinks 7.706       High
cufflinks 0.487        

0 Strain