Gene : Medtr4g005750 M. truncatula Mt4.0v1
Defline:  (1 of 4) 6.2.1.34 - Trans-feruloyl-CoA synthase / Trans-feruloyl-CoA synthetase Description:  4-coumarate:CoA ligase-like protein
Genomic Order:  39 Name:  ? Medtr4g005750
Secondary Identifier:  ? PAC:31113810
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1121 Medicago truncatula pathologic  
Mtruncatula PWY1F-FLAVSYN Medicago truncatula pathologic  
Mtruncatula PWY-361 Medicago truncatula pathologic  
Mtruncatula PWY-6435 Medicago truncatula pathologic  
Mtruncatula PWY-6673 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g005750 0.5kb upstream 0.5kb upstream 4250 true chr4: 349053-353302 Medicago truncatula
Medtr4g005750 0.5kb upstream 0.5kb upstream 500 false chr4: 349053-349552 Medicago truncatula
Medtr4g005750 0.5kb downstream 0.5kb downstream 4250 true chr4: 349553-353802 Medicago truncatula
Medtr4g005750 0.5kb downstream 0.5kb downstream 500 false chr4: 353303-353802 Medicago truncatula
Medtr4g005750 1.0kb upstream 1.0kb upstream 4750 true chr4: 348553-353302 Medicago truncatula
Medtr4g005750 1.0kb upstream 1.0kb upstream 1000 false chr4: 348553-349552 Medicago truncatula
Medtr4g005750 1.0kb downstream 1.0kb downstream 4750 true chr4: 349553-354302 Medicago truncatula
Medtr4g005750 1.0kb downstream 1.0kb downstream 1000 false chr4: 353303-354302 Medicago truncatula
Medtr4g005750 2.0kb upstream 2.0kb upstream 5750 true chr4: 347553-353302 Medicago truncatula
Medtr4g005750 2.0kb upstream 2.0kb upstream 2000 false chr4: 347553-349552 Medicago truncatula
Medtr4g005750 2.0kb downstream 2.0kb downstream 5750 true chr4: 349553-355302 Medicago truncatula
Medtr4g005750 2.0kb downstream 2.0kb downstream 2000 false chr4: 353303-355302 Medicago truncatula
Medtr4g005750 5.0kb upstream 5.0kb upstream 8750 true chr4: 344553-353302 Medicago truncatula
Medtr4g005750 5.0kb upstream 5.0kb upstream 5000 false chr4: 344553-349552 Medicago truncatula
Medtr4g005750 5.0kb downstream 5.0kb downstream 8750 true chr4: 349553-358302 Medicago truncatula
Medtr4g005750 5.0kb downstream 5.0kb downstream 5000 false chr4: 353303-358302 Medicago truncatula
Medtr4g005750 10.0kb upstream 10.0kb upstream 13750 true chr4: 339553-353302 Medicago truncatula
Medtr4g005750 10.0kb upstream 10.0kb upstream 10000 false chr4: 339553-349552 Medicago truncatula
Medtr4g005750 10.0kb downstream 10.0kb downstream 13750 true chr4: 349553-363302 Medicago truncatula
Medtr4g005750 10.0kb downstream 10.0kb downstream 10000 false chr4: 353303-363302 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300508 5265 Fabidae View MSA
124064969 5270 Rosid View MSA
123741286 5271 Pentapetalae View MSA
122790673 5272 Eudicot View MSA
122048251 5273 Angiosperm View MSA
121345883 5274 Embryophyte View MSA
123380283 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.525     High  
cufflinks 27.545     High High
cufflinks 6.798       Low
cufflinks 30.383     High High
cufflinks 24.017     High  
cufflinks 13.346     High  
cufflinks 20.941     High  
cufflinks 11.249     High  
cufflinks 19.466     High  

0 Strain