Gene : Medtr4g005880 M. truncatula Mt4.0v1
Defline:  (1 of 3) 1.1.1.95 - Phosphoglycerate dehydrogenase / Phosphoglyceric acid dehydrogenase Description:  D-3-phosphoglycerate dehydrogenase family protein
Genomic Order:  46 Name:  ? Medtr4g005880
Secondary Identifier:  ? PAC:31109875
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula SER-GLYSYN-PWY Medicago truncatula pathologic  
Mtruncatula SERSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g005880 0.5kb upstream 0.5kb upstream 3909 true chr4: 408411-412319 Medicago truncatula
Medtr4g005880 0.5kb upstream 0.5kb upstream 500 false chr4: 408411-408910 Medicago truncatula
Medtr4g005880 0.5kb downstream 0.5kb downstream 3909 true chr4: 408911-412819 Medicago truncatula
Medtr4g005880 0.5kb downstream 0.5kb downstream 500 false chr4: 412320-412819 Medicago truncatula
Medtr4g005880 1.0kb upstream 1.0kb upstream 4409 true chr4: 407911-412319 Medicago truncatula
Medtr4g005880 1.0kb upstream 1.0kb upstream 1000 false chr4: 407911-408910 Medicago truncatula
Medtr4g005880 1.0kb downstream 1.0kb downstream 4409 true chr4: 408911-413319 Medicago truncatula
Medtr4g005880 1.0kb downstream 1.0kb downstream 1000 false chr4: 412320-413319 Medicago truncatula
Medtr4g005880 2.0kb upstream 2.0kb upstream 5409 true chr4: 406911-412319 Medicago truncatula
Medtr4g005880 2.0kb upstream 2.0kb upstream 2000 false chr4: 406911-408910 Medicago truncatula
Medtr4g005880 2.0kb downstream 2.0kb downstream 5409 true chr4: 408911-414319 Medicago truncatula
Medtr4g005880 2.0kb downstream 2.0kb downstream 2000 false chr4: 412320-414319 Medicago truncatula
Medtr4g005880 5.0kb upstream 5.0kb upstream 8409 true chr4: 403911-412319 Medicago truncatula
Medtr4g005880 5.0kb upstream 5.0kb upstream 5000 false chr4: 403911-408910 Medicago truncatula
Medtr4g005880 5.0kb downstream 5.0kb downstream 8409 true chr4: 408911-417319 Medicago truncatula
Medtr4g005880 5.0kb downstream 5.0kb downstream 5000 false chr4: 412320-417319 Medicago truncatula
Medtr4g005880 10.0kb upstream 10.0kb upstream 13409 true chr4: 398911-412319 Medicago truncatula
Medtr4g005880 10.0kb upstream 10.0kb upstream 10000 false chr4: 398911-408910 Medicago truncatula
Medtr4g005880 10.0kb downstream 10.0kb downstream 13409 true chr4: 408911-422319 Medicago truncatula
Medtr4g005880 10.0kb downstream 10.0kb downstream 10000 false chr4: 412320-422319 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306930 5265 Fabidae View MSA
124069252 5270 Rosid View MSA
123744106 5271 Pentapetalae View MSA
122795023 5272 Eudicot View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.247        
cufflinks 5.468        
cufflinks 2.041        
cufflinks 1.498        
cufflinks 11.046     High High
cufflinks 0.416       Low
cufflinks 7.578        
cufflinks 2.931        
cufflinks 12.359     High High

0 Strain