Gene : Medtr4g009960 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12601:SF18 - TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Description:  eukaryotic translation initiation factor 3 subunit
Genomic Order:  288 Name:  ? Medtr4g009960
Secondary Identifier:  ? PAC:31106575
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g009960 0.5kb upstream 0.5kb upstream 12335 true chr4: 2144712-2157046 Medicago truncatula
Medtr4g009960 0.5kb upstream 0.5kb upstream 500 false chr4: 2156547-2157046 Medicago truncatula
Medtr4g009960 0.5kb downstream 0.5kb downstream 12335 true chr4: 2144212-2156546 Medicago truncatula
Medtr4g009960 0.5kb downstream 0.5kb downstream 500 false chr4: 2144212-2144711 Medicago truncatula
Medtr4g009960 1.0kb upstream 1.0kb upstream 12835 true chr4: 2144712-2157546 Medicago truncatula
Medtr4g009960 1.0kb upstream 1.0kb upstream 1000 false chr4: 2156547-2157546 Medicago truncatula
Medtr4g009960 1.0kb downstream 1.0kb downstream 12835 true chr4: 2143712-2156546 Medicago truncatula
Medtr4g009960 1.0kb downstream 1.0kb downstream 1000 false chr4: 2143712-2144711 Medicago truncatula
Medtr4g009960 2.0kb upstream 2.0kb upstream 13835 true chr4: 2144712-2158546 Medicago truncatula
Medtr4g009960 2.0kb upstream 2.0kb upstream 2000 false chr4: 2156547-2158546 Medicago truncatula
Medtr4g009960 2.0kb downstream 2.0kb downstream 13835 true chr4: 2142712-2156546 Medicago truncatula
Medtr4g009960 2.0kb downstream 2.0kb downstream 2000 false chr4: 2142712-2144711 Medicago truncatula
Medtr4g009960 5.0kb upstream 5.0kb upstream 16835 true chr4: 2144712-2161546 Medicago truncatula
Medtr4g009960 5.0kb upstream 5.0kb upstream 5000 false chr4: 2156547-2161546 Medicago truncatula
Medtr4g009960 5.0kb downstream 5.0kb downstream 16835 true chr4: 2139712-2156546 Medicago truncatula
Medtr4g009960 5.0kb downstream 5.0kb downstream 5000 false chr4: 2139712-2144711 Medicago truncatula
Medtr4g009960 10.0kb upstream 10.0kb upstream 21835 true chr4: 2144712-2166546 Medicago truncatula
Medtr4g009960 10.0kb upstream 10.0kb upstream 10000 false chr4: 2156547-2166546 Medicago truncatula
Medtr4g009960 10.0kb downstream 10.0kb downstream 21835 true chr4: 2134712-2156546 Medicago truncatula
Medtr4g009960 10.0kb downstream 10.0kb downstream 10000 false chr4: 2134712-2144711 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300321 5265 Fabidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.95        
cufflinks 6.603        
cufflinks 5.515        
cufflinks 0.007     Low Low
cufflinks 14.531     High High
cufflinks 0.007     Low Low
cufflinks 0.029     Low  
cufflinks 6.974        
cufflinks 0.028     Low  

0 Strain