Gene : Medtr4g011180 M. truncatula Mt4.0v1
Defline:  (1 of 5) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Description:  3-isopropylmalate dehydratase, small subunit
Genomic Order:  365 Name:  ? Medtr4g011180
Secondary Identifier:  ? PAC:31110007
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula BRANCHED-CHAIN-AA-SYN-PWY Medicago truncatula pathologic  
Mtruncatula LEUSYN-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g011180 0.5kb upstream 0.5kb upstream 6442 true chr4: 2633932-2640373 Medicago truncatula
Medtr4g011180 0.5kb upstream 0.5kb upstream 500 false chr4: 2633932-2634431 Medicago truncatula
Medtr4g011180 0.5kb downstream 0.5kb downstream 6442 true chr4: 2634432-2640873 Medicago truncatula
Medtr4g011180 0.5kb downstream 0.5kb downstream 500 false chr4: 2640374-2640873 Medicago truncatula
Medtr4g011180 1.0kb upstream 1.0kb upstream 6942 true chr4: 2633432-2640373 Medicago truncatula
Medtr4g011180 1.0kb upstream 1.0kb upstream 1000 false chr4: 2633432-2634431 Medicago truncatula
Medtr4g011180 1.0kb downstream 1.0kb downstream 6942 true chr4: 2634432-2641373 Medicago truncatula
Medtr4g011180 1.0kb downstream 1.0kb downstream 1000 false chr4: 2640374-2641373 Medicago truncatula
Medtr4g011180 2.0kb upstream 2.0kb upstream 7942 true chr4: 2632432-2640373 Medicago truncatula
Medtr4g011180 2.0kb upstream 2.0kb upstream 2000 false chr4: 2632432-2634431 Medicago truncatula
Medtr4g011180 2.0kb downstream 2.0kb downstream 7942 true chr4: 2634432-2642373 Medicago truncatula
Medtr4g011180 2.0kb downstream 2.0kb downstream 2000 false chr4: 2640374-2642373 Medicago truncatula
Medtr4g011180 5.0kb upstream 5.0kb upstream 10942 true chr4: 2629432-2640373 Medicago truncatula
Medtr4g011180 5.0kb upstream 5.0kb upstream 5000 false chr4: 2629432-2634431 Medicago truncatula
Medtr4g011180 5.0kb downstream 5.0kb downstream 10942 true chr4: 2634432-2645373 Medicago truncatula
Medtr4g011180 5.0kb downstream 5.0kb downstream 5000 false chr4: 2640374-2645373 Medicago truncatula
Medtr4g011180 10.0kb upstream 10.0kb upstream 15942 true chr4: 2624432-2640373 Medicago truncatula
Medtr4g011180 10.0kb upstream 10.0kb upstream 10000 false chr4: 2624432-2634431 Medicago truncatula
Medtr4g011180 10.0kb downstream 10.0kb downstream 15942 true chr4: 2634432-2650373 Medicago truncatula
Medtr4g011180 10.0kb downstream 10.0kb downstream 10000 false chr4: 2640374-2650373 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
122307024 5265 Fabidae View MSA
124068442 5270 Rosid View MSA
123736502 5271 Pentapetalae View MSA
122789957 5272 Eudicot View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.926       Low
cufflinks 13.41     High  
cufflinks 10.265     High  
cufflinks 16.94     High High
cufflinks 14.252     High  
cufflinks 6.076       Low
cufflinks 6.99        
cufflinks 12.223     High  
cufflinks 8.06        

0 Strain