Gene : Medtr4g011530 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR32370:SF16 - NON-PHOTOTROPIC HYPOCOTYL-LIKE PROTEIN Description:  phototropic-responsive NPH3 family protein
Genomic Order:  388 Name:  ? Medtr4g011530
Secondary Identifier:  ? PAC:31113101
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g011530 0.5kb upstream 0.5kb upstream 3713 true chr4: 2834448-2838160 Medicago truncatula
Medtr4g011530 0.5kb upstream 0.5kb upstream 500 false chr4: 2834448-2834947 Medicago truncatula
Medtr4g011530 0.5kb downstream 0.5kb downstream 3713 true chr4: 2834948-2838660 Medicago truncatula
Medtr4g011530 0.5kb downstream 0.5kb downstream 500 false chr4: 2838161-2838660 Medicago truncatula
Medtr4g011530 1.0kb upstream 1.0kb upstream 4213 true chr4: 2833948-2838160 Medicago truncatula
Medtr4g011530 1.0kb upstream 1.0kb upstream 1000 false chr4: 2833948-2834947 Medicago truncatula
Medtr4g011530 1.0kb downstream 1.0kb downstream 4213 true chr4: 2834948-2839160 Medicago truncatula
Medtr4g011530 1.0kb downstream 1.0kb downstream 1000 false chr4: 2838161-2839160 Medicago truncatula
Medtr4g011530 2.0kb upstream 2.0kb upstream 5213 true chr4: 2832948-2838160 Medicago truncatula
Medtr4g011530 2.0kb upstream 2.0kb upstream 2000 false chr4: 2832948-2834947 Medicago truncatula
Medtr4g011530 2.0kb downstream 2.0kb downstream 5213 true chr4: 2834948-2840160 Medicago truncatula
Medtr4g011530 2.0kb downstream 2.0kb downstream 2000 false chr4: 2838161-2840160 Medicago truncatula
Medtr4g011530 5.0kb upstream 5.0kb upstream 8213 true chr4: 2829948-2838160 Medicago truncatula
Medtr4g011530 5.0kb upstream 5.0kb upstream 5000 false chr4: 2829948-2834947 Medicago truncatula
Medtr4g011530 5.0kb downstream 5.0kb downstream 8213 true chr4: 2834948-2843160 Medicago truncatula
Medtr4g011530 5.0kb downstream 5.0kb downstream 5000 false chr4: 2838161-2843160 Medicago truncatula
Medtr4g011530 10.0kb upstream 10.0kb upstream 13213 true chr4: 2824948-2838160 Medicago truncatula
Medtr4g011530 10.0kb upstream 10.0kb upstream 10000 false chr4: 2824948-2834947 Medicago truncatula
Medtr4g011530 10.0kb downstream 10.0kb downstream 13213 true chr4: 2834948-2848160 Medicago truncatula
Medtr4g011530 10.0kb downstream 10.0kb downstream 10000 false chr4: 2838161-2848160 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313686 5265 Fabidae View MSA
124065820 5270 Rosid View MSA
123742198 5271 Pentapetalae View MSA
122787661 5272 Eudicot View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.178        
cufflinks 16.523     High  
cufflinks 10.365     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 20.083     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low Low
cufflinks 13.142     High  
cufflinks 0.075     Low  

0 Strain