Gene : Medtr4g024620 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Description:  3-phosphoshikimate 1-carboxyvinyltransferase
Genomic Order:  1091 Name:  ? Medtr4g024620
Secondary Identifier:  ? PAC:31107303
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ARO-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6163 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g024620 0.5kb upstream 0.5kb upstream 6657 true chr4: 8324892-8331548 Medicago truncatula
Medtr4g024620 0.5kb upstream 0.5kb upstream 500 false chr4: 8331049-8331548 Medicago truncatula
Medtr4g024620 0.5kb downstream 0.5kb downstream 6657 true chr4: 8324392-8331048 Medicago truncatula
Medtr4g024620 0.5kb downstream 0.5kb downstream 500 false chr4: 8324392-8324891 Medicago truncatula
Medtr4g024620 1.0kb upstream 1.0kb upstream 7157 true chr4: 8324892-8332048 Medicago truncatula
Medtr4g024620 1.0kb upstream 1.0kb upstream 1000 false chr4: 8331049-8332048 Medicago truncatula
Medtr4g024620 1.0kb downstream 1.0kb downstream 7157 true chr4: 8323892-8331048 Medicago truncatula
Medtr4g024620 1.0kb downstream 1.0kb downstream 1000 false chr4: 8323892-8324891 Medicago truncatula
Medtr4g024620 2.0kb upstream 2.0kb upstream 8157 true chr4: 8324892-8333048 Medicago truncatula
Medtr4g024620 2.0kb upstream 2.0kb upstream 2000 false chr4: 8331049-8333048 Medicago truncatula
Medtr4g024620 2.0kb downstream 2.0kb downstream 8157 true chr4: 8322892-8331048 Medicago truncatula
Medtr4g024620 2.0kb downstream 2.0kb downstream 2000 false chr4: 8322892-8324891 Medicago truncatula
Medtr4g024620 5.0kb upstream 5.0kb upstream 11157 true chr4: 8324892-8336048 Medicago truncatula
Medtr4g024620 5.0kb upstream 5.0kb upstream 5000 false chr4: 8331049-8336048 Medicago truncatula
Medtr4g024620 5.0kb downstream 5.0kb downstream 11157 true chr4: 8319892-8331048 Medicago truncatula
Medtr4g024620 5.0kb downstream 5.0kb downstream 5000 false chr4: 8319892-8324891 Medicago truncatula
Medtr4g024620 10.0kb upstream 10.0kb upstream 16157 true chr4: 8324892-8341048 Medicago truncatula
Medtr4g024620 10.0kb upstream 10.0kb upstream 10000 false chr4: 8331049-8341048 Medicago truncatula
Medtr4g024620 10.0kb downstream 10.0kb downstream 16157 true chr4: 8314892-8331048 Medicago truncatula
Medtr4g024620 10.0kb downstream 10.0kb downstream 10000 false chr4: 8314892-8324891 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306052 5265 Fabidae View MSA
124067523 5270 Rosid View MSA
123738347 5271 Pentapetalae View MSA
122792138 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.131       Low
cufflinks 14.689     High  
cufflinks 10.275     High  
cufflinks 7.892        
cufflinks 16.473     High High
cufflinks 3.678       Low
cufflinks 8.203        
cufflinks 11.149     High  
cufflinks 12.269     High  

0 Strain