Gene : Medtr4g070040 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11538:SF40 - PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT Description:  phenylalanyl-tRNA synthetase alpha chain, putative
Genomic Order:  3195 Name:  ? Medtr4g070040
Secondary Identifier:  ? PAC:31108692
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g070040 0.5kb upstream 0.5kb upstream 7938 true chr4: 26355235-26363172 Medicago truncatula
Medtr4g070040 0.5kb upstream 0.5kb upstream 500 false chr4: 26355235-26355734 Medicago truncatula
Medtr4g070040 0.5kb downstream 0.5kb downstream 7938 true chr4: 26355735-26363672 Medicago truncatula
Medtr4g070040 0.5kb downstream 0.5kb downstream 500 false chr4: 26363173-26363672 Medicago truncatula
Medtr4g070040 1.0kb upstream 1.0kb upstream 8438 true chr4: 26354735-26363172 Medicago truncatula
Medtr4g070040 1.0kb upstream 1.0kb upstream 1000 false chr4: 26354735-26355734 Medicago truncatula
Medtr4g070040 1.0kb downstream 1.0kb downstream 8438 true chr4: 26355735-26364172 Medicago truncatula
Medtr4g070040 1.0kb downstream 1.0kb downstream 1000 false chr4: 26363173-26364172 Medicago truncatula
Medtr4g070040 2.0kb upstream 2.0kb upstream 9438 true chr4: 26353735-26363172 Medicago truncatula
Medtr4g070040 2.0kb upstream 2.0kb upstream 2000 false chr4: 26353735-26355734 Medicago truncatula
Medtr4g070040 2.0kb downstream 2.0kb downstream 9438 true chr4: 26355735-26365172 Medicago truncatula
Medtr4g070040 2.0kb downstream 2.0kb downstream 2000 false chr4: 26363173-26365172 Medicago truncatula
Medtr4g070040 5.0kb upstream 5.0kb upstream 12438 true chr4: 26350735-26363172 Medicago truncatula
Medtr4g070040 5.0kb upstream 5.0kb upstream 5000 false chr4: 26350735-26355734 Medicago truncatula
Medtr4g070040 5.0kb downstream 5.0kb downstream 12438 true chr4: 26355735-26368172 Medicago truncatula
Medtr4g070040 5.0kb downstream 5.0kb downstream 5000 false chr4: 26363173-26368172 Medicago truncatula
Medtr4g070040 10.0kb upstream 10.0kb upstream 17438 true chr4: 26345735-26363172 Medicago truncatula
Medtr4g070040 10.0kb upstream 10.0kb upstream 10000 false chr4: 26345735-26355734 Medicago truncatula
Medtr4g070040 10.0kb downstream 10.0kb downstream 17438 true chr4: 26355735-26373172 Medicago truncatula
Medtr4g070040 10.0kb downstream 10.0kb downstream 10000 false chr4: 26363173-26373172 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040985 5273 Angiosperm View MSA
122308788 5265 Fabidae View MSA
124067851 5270 Rosid View MSA
123744864 5271 Pentapetalae View MSA
122791100 5272 Eudicot View MSA
121346168 5274 Embryophyte View MSA
123424573 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.803       High
cufflinks 4.547        
cufflinks 5.243        
cufflinks 4.721        
cufflinks 6.254        
cufflinks 3.289       Low
cufflinks 7.799       High
cufflinks 4.839        
cufflinks 6.199        

0 Strain