Gene : Medtr4g059670 M. truncatula Mt4.0v1
Defline:  (1 of 9) PF06830 - Root cap (Root_cap) Description:  root cap/late embryogenesis related
Genomic Order:  2608 Name:  ? Medtr4g059670
Secondary Identifier:  ? PAC:31114721
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g059670 0.5kb upstream 0.5kb upstream 2505 true chr4: 22008793-22011297 Medicago truncatula
Medtr4g059670 0.5kb upstream 0.5kb upstream 500 false chr4: 22008793-22009292 Medicago truncatula
Medtr4g059670 0.5kb downstream 0.5kb downstream 2505 true chr4: 22009293-22011797 Medicago truncatula
Medtr4g059670 0.5kb downstream 0.5kb downstream 500 false chr4: 22011298-22011797 Medicago truncatula
Medtr4g059670 1.0kb upstream 1.0kb upstream 3005 true chr4: 22008293-22011297 Medicago truncatula
Medtr4g059670 1.0kb upstream 1.0kb upstream 1000 false chr4: 22008293-22009292 Medicago truncatula
Medtr4g059670 1.0kb downstream 1.0kb downstream 3005 true chr4: 22009293-22012297 Medicago truncatula
Medtr4g059670 1.0kb downstream 1.0kb downstream 1000 false chr4: 22011298-22012297 Medicago truncatula
Medtr4g059670 2.0kb upstream 2.0kb upstream 4005 true chr4: 22007293-22011297 Medicago truncatula
Medtr4g059670 2.0kb upstream 2.0kb upstream 2000 false chr4: 22007293-22009292 Medicago truncatula
Medtr4g059670 2.0kb downstream 2.0kb downstream 4005 true chr4: 22009293-22013297 Medicago truncatula
Medtr4g059670 2.0kb downstream 2.0kb downstream 2000 false chr4: 22011298-22013297 Medicago truncatula
Medtr4g059670 5.0kb upstream 5.0kb upstream 7005 true chr4: 22004293-22011297 Medicago truncatula
Medtr4g059670 5.0kb upstream 5.0kb upstream 5000 false chr4: 22004293-22009292 Medicago truncatula
Medtr4g059670 5.0kb downstream 5.0kb downstream 7005 true chr4: 22009293-22016297 Medicago truncatula
Medtr4g059670 5.0kb downstream 5.0kb downstream 5000 false chr4: 22011298-22016297 Medicago truncatula
Medtr4g059670 10.0kb upstream 10.0kb upstream 12005 true chr4: 21999293-22011297 Medicago truncatula
Medtr4g059670 10.0kb upstream 10.0kb upstream 10000 false chr4: 21999293-22009292 Medicago truncatula
Medtr4g059670 10.0kb downstream 10.0kb downstream 12005 true chr4: 22009293-22021297 Medicago truncatula
Medtr4g059670 10.0kb downstream 10.0kb downstream 10000 false chr4: 22011298-22021297 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313139 5265 Fabidae View MSA
124061597 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 8.695        
cufflinks 28.091     High High
cufflinks 2.417        
cufflinks 12.076     High  
cufflinks 0.689       Low
cufflinks 6.378        
cufflinks 17.704     High  
cufflinks 7.69        

0 Strain