Gene : Medtr4g062480 M. truncatula Mt4.0v1
Defline:  (1 of 43) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Description:  PPR containing plant-like protein
Genomic Order:  2754 Name:  ? Medtr4g062480
Secondary Identifier:  ? PAC:31108221
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g062480 0.5kb upstream 0.5kb upstream 3774 true chr4: 23215388-23219161 Medicago truncatula
Medtr4g062480 0.5kb upstream 0.5kb upstream 500 false chr4: 23218662-23219161 Medicago truncatula
Medtr4g062480 0.5kb downstream 0.5kb downstream 3774 true chr4: 23214888-23218661 Medicago truncatula
Medtr4g062480 0.5kb downstream 0.5kb downstream 500 false chr4: 23214888-23215387 Medicago truncatula
Medtr4g062480 1.0kb upstream 1.0kb upstream 4274 true chr4: 23215388-23219661 Medicago truncatula
Medtr4g062480 1.0kb upstream 1.0kb upstream 1000 false chr4: 23218662-23219661 Medicago truncatula
Medtr4g062480 1.0kb downstream 1.0kb downstream 4274 true chr4: 23214388-23218661 Medicago truncatula
Medtr4g062480 1.0kb downstream 1.0kb downstream 1000 false chr4: 23214388-23215387 Medicago truncatula
Medtr4g062480 2.0kb upstream 2.0kb upstream 5274 true chr4: 23215388-23220661 Medicago truncatula
Medtr4g062480 2.0kb upstream 2.0kb upstream 2000 false chr4: 23218662-23220661 Medicago truncatula
Medtr4g062480 2.0kb downstream 2.0kb downstream 5274 true chr4: 23213388-23218661 Medicago truncatula
Medtr4g062480 2.0kb downstream 2.0kb downstream 2000 false chr4: 23213388-23215387 Medicago truncatula
Medtr4g062480 5.0kb upstream 5.0kb upstream 8274 true chr4: 23215388-23223661 Medicago truncatula
Medtr4g062480 5.0kb upstream 5.0kb upstream 5000 false chr4: 23218662-23223661 Medicago truncatula
Medtr4g062480 5.0kb downstream 5.0kb downstream 8274 true chr4: 23210388-23218661 Medicago truncatula
Medtr4g062480 5.0kb downstream 5.0kb downstream 5000 false chr4: 23210388-23215387 Medicago truncatula
Medtr4g062480 10.0kb upstream 10.0kb upstream 13274 true chr4: 23215388-23228661 Medicago truncatula
Medtr4g062480 10.0kb upstream 10.0kb upstream 10000 false chr4: 23218662-23228661 Medicago truncatula
Medtr4g062480 10.0kb downstream 10.0kb downstream 13274 true chr4: 23205388-23218661 Medicago truncatula
Medtr4g062480 10.0kb downstream 10.0kb downstream 10000 false chr4: 23205388-23215387 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305632 5265 Fabidae View MSA
124050338 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.179        
cufflinks 4.926        
cufflinks 8.243       High
cufflinks 1.237       Low
cufflinks 5.581        
cufflinks 1.439       Low
cufflinks 2.788        
cufflinks 5.586        
cufflinks 2.153        

0 Strain