Gene : Medtr4g048530 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23249:SF16 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 Description:  trafficking protein particle complex subunit-like protein
Genomic Order:  2017 Name:  ? Medtr4g048530
Secondary Identifier:  ? PAC:31114826
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g048530 0.5kb upstream 0.5kb upstream 5585 true chr4: 17221469-17227053 Medicago truncatula
Medtr4g048530 0.5kb upstream 0.5kb upstream 500 false chr4: 17221469-17221968 Medicago truncatula
Medtr4g048530 0.5kb downstream 0.5kb downstream 5585 true chr4: 17221969-17227553 Medicago truncatula
Medtr4g048530 0.5kb downstream 0.5kb downstream 500 false chr4: 17227054-17227553 Medicago truncatula
Medtr4g048530 1.0kb upstream 1.0kb upstream 6085 true chr4: 17220969-17227053 Medicago truncatula
Medtr4g048530 1.0kb upstream 1.0kb upstream 1000 false chr4: 17220969-17221968 Medicago truncatula
Medtr4g048530 1.0kb downstream 1.0kb downstream 6085 true chr4: 17221969-17228053 Medicago truncatula
Medtr4g048530 1.0kb downstream 1.0kb downstream 1000 false chr4: 17227054-17228053 Medicago truncatula
Medtr4g048530 2.0kb upstream 2.0kb upstream 7085 true chr4: 17219969-17227053 Medicago truncatula
Medtr4g048530 2.0kb upstream 2.0kb upstream 2000 false chr4: 17219969-17221968 Medicago truncatula
Medtr4g048530 2.0kb downstream 2.0kb downstream 7085 true chr4: 17221969-17229053 Medicago truncatula
Medtr4g048530 2.0kb downstream 2.0kb downstream 2000 false chr4: 17227054-17229053 Medicago truncatula
Medtr4g048530 5.0kb upstream 5.0kb upstream 10085 true chr4: 17216969-17227053 Medicago truncatula
Medtr4g048530 5.0kb upstream 5.0kb upstream 5000 false chr4: 17216969-17221968 Medicago truncatula
Medtr4g048530 5.0kb downstream 5.0kb downstream 10085 true chr4: 17221969-17232053 Medicago truncatula
Medtr4g048530 5.0kb downstream 5.0kb downstream 5000 false chr4: 17227054-17232053 Medicago truncatula
Medtr4g048530 10.0kb upstream 10.0kb upstream 15085 true chr4: 17211969-17227053 Medicago truncatula
Medtr4g048530 10.0kb upstream 10.0kb upstream 10000 false chr4: 17211969-17221968 Medicago truncatula
Medtr4g048530 10.0kb downstream 10.0kb downstream 15085 true chr4: 17221969-17237053 Medicago truncatula
Medtr4g048530 10.0kb downstream 10.0kb downstream 10000 false chr4: 17227054-17237053 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026490 5273 Angiosperm View MSA
122305248 5265 Fabidae View MSA
124068318 5270 Rosid View MSA
123752439 5271 Pentapetalae View MSA
122794769 5272 Eudicot View MSA
121344291 5274 Embryophyte View MSA
123427363 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.355       High
cufflinks 1.261        
cufflinks 1.546        
cufflinks 0.937       Low
cufflinks 1.533        
cufflinks 0.75       Low
cufflinks 1.519        
cufflinks 1.266        
cufflinks 1.662        

0 Strain