Gene : Medtr4g048590 M. truncatula Mt4.0v1
Defline:  (1 of 2) 3.4.24.85 - S2P endopeptidase / Sterol-regulatory element-binding proteins intramembrane protease Description:  RIP metalloprotease RseP
Genomic Order:  2020 Name:  ? Medtr4g048590
Secondary Identifier:  ? PAC:31112376
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g048590 0.5kb upstream 0.5kb upstream 2430 true chr4: 17252223-17254652 Medicago truncatula
Medtr4g048590 0.5kb upstream 0.5kb upstream 500 false chr4: 17254153-17254652 Medicago truncatula
Medtr4g048590 0.5kb downstream 0.5kb downstream 2430 true chr4: 17251723-17254152 Medicago truncatula
Medtr4g048590 0.5kb downstream 0.5kb downstream 500 false chr4: 17251723-17252222 Medicago truncatula
Medtr4g048590 1.0kb upstream 1.0kb upstream 2930 true chr4: 17252223-17255152 Medicago truncatula
Medtr4g048590 1.0kb upstream 1.0kb upstream 1000 false chr4: 17254153-17255152 Medicago truncatula
Medtr4g048590 1.0kb downstream 1.0kb downstream 2930 true chr4: 17251223-17254152 Medicago truncatula
Medtr4g048590 1.0kb downstream 1.0kb downstream 1000 false chr4: 17251223-17252222 Medicago truncatula
Medtr4g048590 2.0kb upstream 2.0kb upstream 3930 true chr4: 17252223-17256152 Medicago truncatula
Medtr4g048590 2.0kb upstream 2.0kb upstream 2000 false chr4: 17254153-17256152 Medicago truncatula
Medtr4g048590 2.0kb downstream 2.0kb downstream 3930 true chr4: 17250223-17254152 Medicago truncatula
Medtr4g048590 2.0kb downstream 2.0kb downstream 2000 false chr4: 17250223-17252222 Medicago truncatula
Medtr4g048590 5.0kb upstream 5.0kb upstream 6930 true chr4: 17252223-17259152 Medicago truncatula
Medtr4g048590 5.0kb upstream 5.0kb upstream 5000 false chr4: 17254153-17259152 Medicago truncatula
Medtr4g048590 5.0kb downstream 5.0kb downstream 6930 true chr4: 17247223-17254152 Medicago truncatula
Medtr4g048590 5.0kb downstream 5.0kb downstream 5000 false chr4: 17247223-17252222 Medicago truncatula
Medtr4g048590 10.0kb upstream 10.0kb upstream 11930 true chr4: 17252223-17264152 Medicago truncatula
Medtr4g048590 10.0kb upstream 10.0kb upstream 10000 false chr4: 17254153-17264152 Medicago truncatula
Medtr4g048590 10.0kb downstream 10.0kb downstream 11930 true chr4: 17242223-17254152 Medicago truncatula
Medtr4g048590 10.0kb downstream 10.0kb downstream 10000 false chr4: 17242223-17252222 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301183 5265 Fabidae View MSA
124063019 5270 Rosid View MSA
123739273 5271 Pentapetalae View MSA
122788607 5272 Eudicot View MSA
122044779 5273 Angiosperm View MSA
121347975 5274 Embryophyte View MSA
123424345 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.406       Low
cufflinks 42.049     High High
cufflinks 23.012     High  
cufflinks 6.772        
cufflinks 50.505     High High
cufflinks 1.737       Low
cufflinks 4.804        
cufflinks 31.625     High  
cufflinks 3.134        

0 Strain