Gene : Medtr4g050770 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Description:  photosystem II reaction center protein
Genomic Order:  2101 Name:  ? Medtr4g050770
Secondary Identifier:  ? PAC:31109133
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g050770 0.5kb upstream 0.5kb upstream 932 true chr4: 18030728-18031659 Medicago truncatula
Medtr4g050770 0.5kb upstream 0.5kb upstream 500 false chr4: 18031160-18031659 Medicago truncatula
Medtr4g050770 0.5kb downstream 0.5kb downstream 932 true chr4: 18030228-18031159 Medicago truncatula
Medtr4g050770 0.5kb downstream 0.5kb downstream 500 false chr4: 18030228-18030727 Medicago truncatula
Medtr4g050770 1.0kb upstream 1.0kb upstream 1432 true chr4: 18030728-18032159 Medicago truncatula
Medtr4g050770 1.0kb upstream 1.0kb upstream 1000 false chr4: 18031160-18032159 Medicago truncatula
Medtr4g050770 1.0kb downstream 1.0kb downstream 1432 true chr4: 18029728-18031159 Medicago truncatula
Medtr4g050770 1.0kb downstream 1.0kb downstream 1000 false chr4: 18029728-18030727 Medicago truncatula
Medtr4g050770 2.0kb upstream 2.0kb upstream 2432 true chr4: 18030728-18033159 Medicago truncatula
Medtr4g050770 2.0kb upstream 2.0kb upstream 2000 false chr4: 18031160-18033159 Medicago truncatula
Medtr4g050770 2.0kb downstream 2.0kb downstream 2432 true chr4: 18028728-18031159 Medicago truncatula
Medtr4g050770 2.0kb downstream 2.0kb downstream 2000 false chr4: 18028728-18030727 Medicago truncatula
Medtr4g050770 5.0kb upstream 5.0kb upstream 5432 true chr4: 18030728-18036159 Medicago truncatula
Medtr4g050770 5.0kb upstream 5.0kb upstream 5000 false chr4: 18031160-18036159 Medicago truncatula
Medtr4g050770 5.0kb downstream 5.0kb downstream 5432 true chr4: 18025728-18031159 Medicago truncatula
Medtr4g050770 5.0kb downstream 5.0kb downstream 5000 false chr4: 18025728-18030727 Medicago truncatula
Medtr4g050770 10.0kb upstream 10.0kb upstream 10432 true chr4: 18030728-18041159 Medicago truncatula
Medtr4g050770 10.0kb upstream 10.0kb upstream 10000 false chr4: 18031160-18041159 Medicago truncatula
Medtr4g050770 10.0kb downstream 10.0kb downstream 10432 true chr4: 18020728-18031159 Medicago truncatula
Medtr4g050770 10.0kb downstream 10.0kb downstream 10000 false chr4: 18020728-18030727 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122289180 5265 Fabidae View MSA
124074892 5270 Rosid View MSA
123753442 5271 Pentapetalae View MSA
122794783 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain