Gene : Medtr4g052840 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31852:SF7 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Description:  late embryogenesis abundant hydroxyproline-rich glycoprotein
Genomic Order:  2265 Name:  ? Medtr4g052840
Secondary Identifier:  ? PAC:31111119
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g052840 0.5kb upstream 0.5kb upstream 2618 true chr4: 19170380-19172997 Medicago truncatula
Medtr4g052840 0.5kb upstream 0.5kb upstream 500 false chr4: 19170380-19170879 Medicago truncatula
Medtr4g052840 0.5kb downstream 0.5kb downstream 2618 true chr4: 19170880-19173497 Medicago truncatula
Medtr4g052840 0.5kb downstream 0.5kb downstream 500 false chr4: 19172998-19173497 Medicago truncatula
Medtr4g052840 1.0kb upstream 1.0kb upstream 3118 true chr4: 19169880-19172997 Medicago truncatula
Medtr4g052840 1.0kb upstream 1.0kb upstream 1000 false chr4: 19169880-19170879 Medicago truncatula
Medtr4g052840 1.0kb downstream 1.0kb downstream 3118 true chr4: 19170880-19173997 Medicago truncatula
Medtr4g052840 1.0kb downstream 1.0kb downstream 1000 false chr4: 19172998-19173997 Medicago truncatula
Medtr4g052840 2.0kb upstream 2.0kb upstream 4118 true chr4: 19168880-19172997 Medicago truncatula
Medtr4g052840 2.0kb upstream 2.0kb upstream 2000 false chr4: 19168880-19170879 Medicago truncatula
Medtr4g052840 2.0kb downstream 2.0kb downstream 4118 true chr4: 19170880-19174997 Medicago truncatula
Medtr4g052840 2.0kb downstream 2.0kb downstream 2000 false chr4: 19172998-19174997 Medicago truncatula
Medtr4g052840 5.0kb upstream 5.0kb upstream 7118 true chr4: 19165880-19172997 Medicago truncatula
Medtr4g052840 5.0kb upstream 5.0kb upstream 5000 false chr4: 19165880-19170879 Medicago truncatula
Medtr4g052840 5.0kb downstream 5.0kb downstream 7118 true chr4: 19170880-19177997 Medicago truncatula
Medtr4g052840 5.0kb downstream 5.0kb downstream 5000 false chr4: 19172998-19177997 Medicago truncatula
Medtr4g052840 10.0kb upstream 10.0kb upstream 12118 true chr4: 19160880-19172997 Medicago truncatula
Medtr4g052840 10.0kb upstream 10.0kb upstream 10000 false chr4: 19160880-19170879 Medicago truncatula
Medtr4g052840 10.0kb downstream 10.0kb downstream 12118 true chr4: 19170880-19182997 Medicago truncatula
Medtr4g052840 10.0kb downstream 10.0kb downstream 10000 false chr4: 19172998-19182997 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305148 5265 Fabidae View MSA
124065913 5270 Rosid View MSA
123751037 5271 Pentapetalae View MSA
122791768 5272 Eudicot View MSA
122047414 5273 Angiosperm View MSA
121346777 5274 Embryophyte View MSA
123380442 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.938       Low
cufflinks 13.739     High High
cufflinks 6.544        
cufflinks 1.285       Low
cufflinks 10.695     High  
cufflinks 0.882       Low
cufflinks 3.206        
cufflinks 11.818     High  
cufflinks 6.809        

0 Strain