Gene : Medtr4g051290 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Description:  photosystem II Q(B) protein
Genomic Order:  2144 Name:  ? Medtr4g051290
Secondary Identifier:  ? PAC:31108493
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g051290 0.5kb upstream 0.5kb upstream 1776 true chr4: 18303495-18305270 Medicago truncatula
Medtr4g051290 0.5kb upstream 0.5kb upstream 500 false chr4: 18303495-18303994 Medicago truncatula
Medtr4g051290 0.5kb downstream 0.5kb downstream 1776 true chr4: 18303995-18305770 Medicago truncatula
Medtr4g051290 0.5kb downstream 0.5kb downstream 500 false chr4: 18305271-18305770 Medicago truncatula
Medtr4g051290 1.0kb upstream 1.0kb upstream 2276 true chr4: 18302995-18305270 Medicago truncatula
Medtr4g051290 1.0kb upstream 1.0kb upstream 1000 false chr4: 18302995-18303994 Medicago truncatula
Medtr4g051290 1.0kb downstream 1.0kb downstream 2276 true chr4: 18303995-18306270 Medicago truncatula
Medtr4g051290 1.0kb downstream 1.0kb downstream 1000 false chr4: 18305271-18306270 Medicago truncatula
Medtr4g051290 2.0kb upstream 2.0kb upstream 3276 true chr4: 18301995-18305270 Medicago truncatula
Medtr4g051290 2.0kb upstream 2.0kb upstream 2000 false chr4: 18301995-18303994 Medicago truncatula
Medtr4g051290 2.0kb downstream 2.0kb downstream 3276 true chr4: 18303995-18307270 Medicago truncatula
Medtr4g051290 2.0kb downstream 2.0kb downstream 2000 false chr4: 18305271-18307270 Medicago truncatula
Medtr4g051290 5.0kb upstream 5.0kb upstream 6276 true chr4: 18298995-18305270 Medicago truncatula
Medtr4g051290 5.0kb upstream 5.0kb upstream 5000 false chr4: 18298995-18303994 Medicago truncatula
Medtr4g051290 5.0kb downstream 5.0kb downstream 6276 true chr4: 18303995-18310270 Medicago truncatula
Medtr4g051290 5.0kb downstream 5.0kb downstream 5000 false chr4: 18305271-18310270 Medicago truncatula
Medtr4g051290 10.0kb upstream 10.0kb upstream 11276 true chr4: 18293995-18305270 Medicago truncatula
Medtr4g051290 10.0kb upstream 10.0kb upstream 10000 false chr4: 18293995-18303994 Medicago truncatula
Medtr4g051290 10.0kb downstream 10.0kb downstream 11276 true chr4: 18303995-18315270 Medicago truncatula
Medtr4g051290 10.0kb downstream 10.0kb downstream 10000 false chr4: 18305271-18315270 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298238 5265 Fabidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.011     Low Low
cufflinks 0.94        
cufflinks 0.975        
cufflinks 0.019     Low Low
cufflinks 1.201        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.983        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain