Gene : Medtr4g059550 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.1.1.35 - tRNA (uracil(54)-C(5))-methyltransferase / tRNA:m(5)U(54)-methyltransferase Description:  zinc finger CCCH domain protein
Genomic Order:  2604 Name:  ? Medtr4g059550
Secondary Identifier:  ? PAC:31111660
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g059550 0.5kb upstream 0.5kb upstream 7723 true chr4: 21939628-21947350 Medicago truncatula
Medtr4g059550 0.5kb upstream 0.5kb upstream 500 false chr4: 21946851-21947350 Medicago truncatula
Medtr4g059550 0.5kb downstream 0.5kb downstream 7723 true chr4: 21939128-21946850 Medicago truncatula
Medtr4g059550 0.5kb downstream 0.5kb downstream 500 false chr4: 21939128-21939627 Medicago truncatula
Medtr4g059550 1.0kb upstream 1.0kb upstream 8223 true chr4: 21939628-21947850 Medicago truncatula
Medtr4g059550 1.0kb upstream 1.0kb upstream 1000 false chr4: 21946851-21947850 Medicago truncatula
Medtr4g059550 1.0kb downstream 1.0kb downstream 8223 true chr4: 21938628-21946850 Medicago truncatula
Medtr4g059550 1.0kb downstream 1.0kb downstream 1000 false chr4: 21938628-21939627 Medicago truncatula
Medtr4g059550 2.0kb upstream 2.0kb upstream 9223 true chr4: 21939628-21948850 Medicago truncatula
Medtr4g059550 2.0kb upstream 2.0kb upstream 2000 false chr4: 21946851-21948850 Medicago truncatula
Medtr4g059550 2.0kb downstream 2.0kb downstream 9223 true chr4: 21937628-21946850 Medicago truncatula
Medtr4g059550 2.0kb downstream 2.0kb downstream 2000 false chr4: 21937628-21939627 Medicago truncatula
Medtr4g059550 5.0kb upstream 5.0kb upstream 12223 true chr4: 21939628-21951850 Medicago truncatula
Medtr4g059550 5.0kb upstream 5.0kb upstream 5000 false chr4: 21946851-21951850 Medicago truncatula
Medtr4g059550 5.0kb downstream 5.0kb downstream 12223 true chr4: 21934628-21946850 Medicago truncatula
Medtr4g059550 5.0kb downstream 5.0kb downstream 5000 false chr4: 21934628-21939627 Medicago truncatula
Medtr4g059550 10.0kb upstream 10.0kb upstream 17223 true chr4: 21939628-21956850 Medicago truncatula
Medtr4g059550 10.0kb upstream 10.0kb upstream 10000 false chr4: 21946851-21956850 Medicago truncatula
Medtr4g059550 10.0kb downstream 10.0kb downstream 17223 true chr4: 21929628-21946850 Medicago truncatula
Medtr4g059550 10.0kb downstream 10.0kb downstream 10000 false chr4: 21929628-21939627 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041225 5273 Angiosperm View MSA
122299448 5265 Fabidae View MSA
124063795 5270 Rosid View MSA
123737485 5271 Pentapetalae View MSA
122787595 5272 Eudicot View MSA
121344399 5274 Embryophyte View MSA
123425601 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.168        
cufflinks 2.31        
cufflinks 2.323        
cufflinks 1.364        
cufflinks 2.934       High
cufflinks 0.884       Low
cufflinks 1.418        
cufflinks 1.901        
cufflinks 2.002        

0 Strain