Gene : Medtr4g053350 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR23074:SF93 - F10A12.27/F10A12.27 Description:  AAA-type ATPase family protein
Genomic Order:  2309 Name:  ? Medtr4g053350
Secondary Identifier:  ? PAC:31112938
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g053350 0.5kb upstream 0.5kb upstream 6267 true chr4: 19411809-19418075 Medicago truncatula
Medtr4g053350 0.5kb upstream 0.5kb upstream 500 false chr4: 19411809-19412308 Medicago truncatula
Medtr4g053350 0.5kb downstream 0.5kb downstream 6267 true chr4: 19412309-19418575 Medicago truncatula
Medtr4g053350 0.5kb downstream 0.5kb downstream 500 false chr4: 19418076-19418575 Medicago truncatula
Medtr4g053350 1.0kb upstream 1.0kb upstream 6767 true chr4: 19411309-19418075 Medicago truncatula
Medtr4g053350 1.0kb upstream 1.0kb upstream 1000 false chr4: 19411309-19412308 Medicago truncatula
Medtr4g053350 1.0kb downstream 1.0kb downstream 6767 true chr4: 19412309-19419075 Medicago truncatula
Medtr4g053350 1.0kb downstream 1.0kb downstream 1000 false chr4: 19418076-19419075 Medicago truncatula
Medtr4g053350 2.0kb upstream 2.0kb upstream 7767 true chr4: 19410309-19418075 Medicago truncatula
Medtr4g053350 2.0kb upstream 2.0kb upstream 2000 false chr4: 19410309-19412308 Medicago truncatula
Medtr4g053350 2.0kb downstream 2.0kb downstream 7767 true chr4: 19412309-19420075 Medicago truncatula
Medtr4g053350 2.0kb downstream 2.0kb downstream 2000 false chr4: 19418076-19420075 Medicago truncatula
Medtr4g053350 5.0kb upstream 5.0kb upstream 10767 true chr4: 19407309-19418075 Medicago truncatula
Medtr4g053350 5.0kb upstream 5.0kb upstream 5000 false chr4: 19407309-19412308 Medicago truncatula
Medtr4g053350 5.0kb downstream 5.0kb downstream 10767 true chr4: 19412309-19423075 Medicago truncatula
Medtr4g053350 5.0kb downstream 5.0kb downstream 5000 false chr4: 19418076-19423075 Medicago truncatula
Medtr4g053350 10.0kb upstream 10.0kb upstream 15767 true chr4: 19402309-19418075 Medicago truncatula
Medtr4g053350 10.0kb upstream 10.0kb upstream 10000 false chr4: 19402309-19412308 Medicago truncatula
Medtr4g053350 10.0kb downstream 10.0kb downstream 15767 true chr4: 19412309-19428075 Medicago truncatula
Medtr4g053350 10.0kb downstream 10.0kb downstream 10000 false chr4: 19418076-19428075 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040967 5273 Angiosperm View MSA
122311224 5265 Fabidae View MSA
124065448 5270 Rosid View MSA
123749867 5271 Pentapetalae View MSA
122796132 5272 Eudicot View MSA
121350779 5274 Embryophyte View MSA
123428117 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.694     High  
cufflinks 10.392     High  
cufflinks 12.746     High High
cufflinks 5.985       Low
cufflinks 10.418     High  
cufflinks 4.769       Low
cufflinks 9.665        
cufflinks 10.366     High  
cufflinks 7.047        

0 Strain