Gene : Medtr4g055110 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11088:SF26 - TRNA DIMETHYLALLYLTRANSFERASE 2 Description:  tRNA isopentenyltransferase
Genomic Order:  2373 Name:  ? Medtr4g055110
Secondary Identifier:  ? PAC:31110020
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-2781 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g055110 0.5kb upstream 0.5kb upstream 5454 true chr4: 20045693-20051146 Medicago truncatula
Medtr4g055110 0.5kb upstream 0.5kb upstream 500 false chr4: 20045693-20046192 Medicago truncatula
Medtr4g055110 0.5kb downstream 0.5kb downstream 5454 true chr4: 20046193-20051646 Medicago truncatula
Medtr4g055110 0.5kb downstream 0.5kb downstream 500 false chr4: 20051147-20051646 Medicago truncatula
Medtr4g055110 1.0kb upstream 1.0kb upstream 5954 true chr4: 20045193-20051146 Medicago truncatula
Medtr4g055110 1.0kb upstream 1.0kb upstream 1000 false chr4: 20045193-20046192 Medicago truncatula
Medtr4g055110 1.0kb downstream 1.0kb downstream 5954 true chr4: 20046193-20052146 Medicago truncatula
Medtr4g055110 1.0kb downstream 1.0kb downstream 1000 false chr4: 20051147-20052146 Medicago truncatula
Medtr4g055110 2.0kb upstream 2.0kb upstream 6954 true chr4: 20044193-20051146 Medicago truncatula
Medtr4g055110 2.0kb upstream 2.0kb upstream 2000 false chr4: 20044193-20046192 Medicago truncatula
Medtr4g055110 2.0kb downstream 2.0kb downstream 6954 true chr4: 20046193-20053146 Medicago truncatula
Medtr4g055110 2.0kb downstream 2.0kb downstream 2000 false chr4: 20051147-20053146 Medicago truncatula
Medtr4g055110 5.0kb upstream 5.0kb upstream 9954 true chr4: 20041193-20051146 Medicago truncatula
Medtr4g055110 5.0kb upstream 5.0kb upstream 5000 false chr4: 20041193-20046192 Medicago truncatula
Medtr4g055110 5.0kb downstream 5.0kb downstream 9954 true chr4: 20046193-20056146 Medicago truncatula
Medtr4g055110 5.0kb downstream 5.0kb downstream 5000 false chr4: 20051147-20056146 Medicago truncatula
Medtr4g055110 10.0kb upstream 10.0kb upstream 14954 true chr4: 20036193-20051146 Medicago truncatula
Medtr4g055110 10.0kb upstream 10.0kb upstream 10000 false chr4: 20036193-20046192 Medicago truncatula
Medtr4g055110 10.0kb downstream 10.0kb downstream 14954 true chr4: 20046193-20061146 Medicago truncatula
Medtr4g055110 10.0kb downstream 10.0kb downstream 10000 false chr4: 20051147-20061146 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304265 5265 Fabidae View MSA
124061128 5270 Rosid View MSA
123740850 5271 Pentapetalae View MSA
122786758 5272 Eudicot View MSA
122043118 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.527        
cufflinks 1.774        
cufflinks 1.838        
cufflinks 0.519       Low
cufflinks 2.242       High
cufflinks 0.929        
cufflinks 0.955        
cufflinks 1.713        
cufflinks 0.827        

0 Strain