Gene : Medtr4g057730 M. truncatula Mt4.0v1
Defline:  (1 of 38) PF00501//PF13193 - AMP-binding enzyme (AMP-binding) // AMP-binding enzyme C-terminal domain (AMP-binding_C) Description:  4-coumarate:CoA ligase-like protein
Genomic Order:  2519 Name:  ? Medtr4g057730
Secondary Identifier:  ? PAC:31113024
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g057730 0.5kb upstream 0.5kb upstream 3684 true chr4: 21241398-21245081 Medicago truncatula
Medtr4g057730 0.5kb upstream 0.5kb upstream 500 false chr4: 21241398-21241897 Medicago truncatula
Medtr4g057730 0.5kb downstream 0.5kb downstream 3684 true chr4: 21241898-21245581 Medicago truncatula
Medtr4g057730 0.5kb downstream 0.5kb downstream 500 false chr4: 21245082-21245581 Medicago truncatula
Medtr4g057730 1.0kb upstream 1.0kb upstream 4184 true chr4: 21240898-21245081 Medicago truncatula
Medtr4g057730 1.0kb upstream 1.0kb upstream 1000 false chr4: 21240898-21241897 Medicago truncatula
Medtr4g057730 1.0kb downstream 1.0kb downstream 4184 true chr4: 21241898-21246081 Medicago truncatula
Medtr4g057730 1.0kb downstream 1.0kb downstream 1000 false chr4: 21245082-21246081 Medicago truncatula
Medtr4g057730 2.0kb upstream 2.0kb upstream 5184 true chr4: 21239898-21245081 Medicago truncatula
Medtr4g057730 2.0kb upstream 2.0kb upstream 2000 false chr4: 21239898-21241897 Medicago truncatula
Medtr4g057730 2.0kb downstream 2.0kb downstream 5184 true chr4: 21241898-21247081 Medicago truncatula
Medtr4g057730 2.0kb downstream 2.0kb downstream 2000 false chr4: 21245082-21247081 Medicago truncatula
Medtr4g057730 5.0kb upstream 5.0kb upstream 8184 true chr4: 21236898-21245081 Medicago truncatula
Medtr4g057730 5.0kb upstream 5.0kb upstream 5000 false chr4: 21236898-21241897 Medicago truncatula
Medtr4g057730 5.0kb downstream 5.0kb downstream 8184 true chr4: 21241898-21250081 Medicago truncatula
Medtr4g057730 5.0kb downstream 5.0kb downstream 5000 false chr4: 21245082-21250081 Medicago truncatula
Medtr4g057730 10.0kb upstream 10.0kb upstream 13184 true chr4: 21231898-21245081 Medicago truncatula
Medtr4g057730 10.0kb upstream 10.0kb upstream 10000 false chr4: 21231898-21241897 Medicago truncatula
Medtr4g057730 10.0kb downstream 10.0kb downstream 13184 true chr4: 21241898-21255081 Medicago truncatula
Medtr4g057730 10.0kb downstream 10.0kb downstream 10000 false chr4: 21245082-21255081 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314766 5265 Fabidae View MSA
124066794 5270 Rosid View MSA
123740977 5271 Pentapetalae View MSA
122792811 5272 Eudicot View MSA
122045114 5273 Angiosperm View MSA
121350022 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.76        
cufflinks 8.863        
cufflinks 15.932     High High
cufflinks 0.123        
cufflinks 8.562        
cufflinks 0.258        
cufflinks 0.05     Low Low
cufflinks 11.675     High High
cufflinks 0.029     Low Low

0 Strain