Gene : Medtr4g037505 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Description:  photosystem II 5 kDa protein
Genomic Order:  1727 Name:  ? Medtr4g037505
Secondary Identifier:  ? PAC:31110702
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g037505 0.5kb upstream 0.5kb upstream 1185 true chr4: 13800984-13802168 Medicago truncatula
Medtr4g037505 0.5kb upstream 0.5kb upstream 500 false chr4: 13801669-13802168 Medicago truncatula
Medtr4g037505 0.5kb downstream 0.5kb downstream 1185 true chr4: 13800484-13801668 Medicago truncatula
Medtr4g037505 0.5kb downstream 0.5kb downstream 500 false chr4: 13800484-13800983 Medicago truncatula
Medtr4g037505 1.0kb upstream 1.0kb upstream 1685 true chr4: 13800984-13802668 Medicago truncatula
Medtr4g037505 1.0kb upstream 1.0kb upstream 1000 false chr4: 13801669-13802668 Medicago truncatula
Medtr4g037505 1.0kb downstream 1.0kb downstream 1685 true chr4: 13799984-13801668 Medicago truncatula
Medtr4g037505 1.0kb downstream 1.0kb downstream 1000 false chr4: 13799984-13800983 Medicago truncatula
Medtr4g037505 2.0kb upstream 2.0kb upstream 2685 true chr4: 13800984-13803668 Medicago truncatula
Medtr4g037505 2.0kb upstream 2.0kb upstream 2000 false chr4: 13801669-13803668 Medicago truncatula
Medtr4g037505 2.0kb downstream 2.0kb downstream 2685 true chr4: 13798984-13801668 Medicago truncatula
Medtr4g037505 2.0kb downstream 2.0kb downstream 2000 false chr4: 13798984-13800983 Medicago truncatula
Medtr4g037505 5.0kb upstream 5.0kb upstream 5685 true chr4: 13800984-13806668 Medicago truncatula
Medtr4g037505 5.0kb upstream 5.0kb upstream 5000 false chr4: 13801669-13806668 Medicago truncatula
Medtr4g037505 5.0kb downstream 5.0kb downstream 5685 true chr4: 13795984-13801668 Medicago truncatula
Medtr4g037505 5.0kb downstream 5.0kb downstream 5000 false chr4: 13795984-13800983 Medicago truncatula
Medtr4g037505 10.0kb upstream 10.0kb upstream 10685 true chr4: 13800984-13811668 Medicago truncatula
Medtr4g037505 10.0kb upstream 10.0kb upstream 10000 false chr4: 13801669-13811668 Medicago truncatula
Medtr4g037505 10.0kb downstream 10.0kb downstream 10685 true chr4: 13790984-13801668 Medicago truncatula
Medtr4g037505 10.0kb downstream 10.0kb downstream 10000 false chr4: 13790984-13800983 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305386 5265 Fabidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.132       Low
cufflinks 777.169     High High
cufflinks 512.043     High  
cufflinks 3.135        
cufflinks 669.574     High High
cufflinks 5.318        
cufflinks 0.603        
cufflinks 685.798     High High
cufflinks 1.22        

0 Strain