Gene : Medtr4g048190 M. truncatula Mt4.0v1
Defline:  (1 of 8) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Description:  cytoplasmic-like aconitate hydratase
Genomic Order:  2000 Name:  ? Medtr4g048190
Secondary Identifier:  ? PAC:31109367
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYOXYLATE-BYPASS Medicago truncatula pathologic  
Mtruncatula PWY-5464 Medicago truncatula pathologic  
Mtruncatula PWY-561 Medicago truncatula pathologic  
Mtruncatula PWY-5690 Medicago truncatula pathologic  
Mtruncatula PWY-6549 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g048190 0.5kb upstream 0.5kb upstream 9928 true chr4: 17035507-17045434 Medicago truncatula
Medtr4g048190 0.5kb upstream 0.5kb upstream 500 false chr4: 17044935-17045434 Medicago truncatula
Medtr4g048190 0.5kb downstream 0.5kb downstream 9928 true chr4: 17035007-17044934 Medicago truncatula
Medtr4g048190 0.5kb downstream 0.5kb downstream 500 false chr4: 17035007-17035506 Medicago truncatula
Medtr4g048190 1.0kb upstream 1.0kb upstream 10428 true chr4: 17035507-17045934 Medicago truncatula
Medtr4g048190 1.0kb upstream 1.0kb upstream 1000 false chr4: 17044935-17045934 Medicago truncatula
Medtr4g048190 1.0kb downstream 1.0kb downstream 10428 true chr4: 17034507-17044934 Medicago truncatula
Medtr4g048190 1.0kb downstream 1.0kb downstream 1000 false chr4: 17034507-17035506 Medicago truncatula
Medtr4g048190 2.0kb upstream 2.0kb upstream 11428 true chr4: 17035507-17046934 Medicago truncatula
Medtr4g048190 2.0kb upstream 2.0kb upstream 2000 false chr4: 17044935-17046934 Medicago truncatula
Medtr4g048190 2.0kb downstream 2.0kb downstream 11428 true chr4: 17033507-17044934 Medicago truncatula
Medtr4g048190 2.0kb downstream 2.0kb downstream 2000 false chr4: 17033507-17035506 Medicago truncatula
Medtr4g048190 5.0kb upstream 5.0kb upstream 14428 true chr4: 17035507-17049934 Medicago truncatula
Medtr4g048190 5.0kb upstream 5.0kb upstream 5000 false chr4: 17044935-17049934 Medicago truncatula
Medtr4g048190 5.0kb downstream 5.0kb downstream 14428 true chr4: 17030507-17044934 Medicago truncatula
Medtr4g048190 5.0kb downstream 5.0kb downstream 5000 false chr4: 17030507-17035506 Medicago truncatula
Medtr4g048190 10.0kb upstream 10.0kb upstream 19428 true chr4: 17035507-17054934 Medicago truncatula
Medtr4g048190 10.0kb upstream 10.0kb upstream 10000 false chr4: 17044935-17054934 Medicago truncatula
Medtr4g048190 10.0kb downstream 10.0kb downstream 19428 true chr4: 17025507-17044934 Medicago truncatula
Medtr4g048190 10.0kb downstream 10.0kb downstream 10000 false chr4: 17025507-17035506 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296537 5265 Fabidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.88       High
cufflinks 0.837        
cufflinks 0.512        
cufflinks 0.585        
cufflinks 1.01        
cufflinks 0.51        
cufflinks 0.845        
cufflinks 0.531        
cufflinks 1.66       High

0 Strain