Gene : Medtr4g052040 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR33057:SF17 - GB Description:  ovate transcriptional repressor
Genomic Order:  2223 Name:  ? Medtr4g052040
Secondary Identifier:  ? PAC:31110539
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g052040 0.5kb upstream 0.5kb upstream 1562 true chr4: 18828597-18830158 Medicago truncatula
Medtr4g052040 0.5kb upstream 0.5kb upstream 500 false chr4: 18828597-18829096 Medicago truncatula
Medtr4g052040 0.5kb downstream 0.5kb downstream 1562 true chr4: 18829097-18830658 Medicago truncatula
Medtr4g052040 0.5kb downstream 0.5kb downstream 500 false chr4: 18830159-18830658 Medicago truncatula
Medtr4g052040 1.0kb upstream 1.0kb upstream 2062 true chr4: 18828097-18830158 Medicago truncatula
Medtr4g052040 1.0kb upstream 1.0kb upstream 1000 false chr4: 18828097-18829096 Medicago truncatula
Medtr4g052040 1.0kb downstream 1.0kb downstream 2062 true chr4: 18829097-18831158 Medicago truncatula
Medtr4g052040 1.0kb downstream 1.0kb downstream 1000 false chr4: 18830159-18831158 Medicago truncatula
Medtr4g052040 2.0kb upstream 2.0kb upstream 3062 true chr4: 18827097-18830158 Medicago truncatula
Medtr4g052040 2.0kb upstream 2.0kb upstream 2000 false chr4: 18827097-18829096 Medicago truncatula
Medtr4g052040 2.0kb downstream 2.0kb downstream 3062 true chr4: 18829097-18832158 Medicago truncatula
Medtr4g052040 2.0kb downstream 2.0kb downstream 2000 false chr4: 18830159-18832158 Medicago truncatula
Medtr4g052040 5.0kb upstream 5.0kb upstream 6062 true chr4: 18824097-18830158 Medicago truncatula
Medtr4g052040 5.0kb upstream 5.0kb upstream 5000 false chr4: 18824097-18829096 Medicago truncatula
Medtr4g052040 5.0kb downstream 5.0kb downstream 6062 true chr4: 18829097-18835158 Medicago truncatula
Medtr4g052040 5.0kb downstream 5.0kb downstream 5000 false chr4: 18830159-18835158 Medicago truncatula
Medtr4g052040 10.0kb upstream 10.0kb upstream 11062 true chr4: 18819097-18830158 Medicago truncatula
Medtr4g052040 10.0kb upstream 10.0kb upstream 10000 false chr4: 18819097-18829096 Medicago truncatula
Medtr4g052040 10.0kb downstream 10.0kb downstream 11062 true chr4: 18829097-18840158 Medicago truncatula
Medtr4g052040 10.0kb downstream 10.0kb downstream 10000 false chr4: 18830159-18840158 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315278 5265 Fabidae View MSA
124070173 5270 Rosid View MSA
123748591 5271 Pentapetalae View MSA
122791158 5272 Eudicot View MSA
122048787 5273 Angiosperm View MSA
121311113 5274 Embryophyte View MSA
123348456 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.251       Low
cufflinks 0.94        
cufflinks 0.551        
cufflinks 0.582        
cufflinks 0.865        
cufflinks 0.115     Low Low
cufflinks 1.016        
cufflinks 0.771        
cufflinks 0.822        

0 Strain