Gene : Medtr4g093170 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Description:  methylmalonate-semialdehyde dehydrogenase
Genomic Order:  4683 Name:  ? Medtr4g093170
Secondary Identifier:  ? PAC:31108646
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula VALDEG-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g093170 0.5kb upstream 0.5kb upstream 5259 true chr4: 36972535-36977793 Medicago truncatula
Medtr4g093170 0.5kb upstream 0.5kb upstream 500 false chr4: 36972535-36973034 Medicago truncatula
Medtr4g093170 0.5kb downstream 0.5kb downstream 5259 true chr4: 36973035-36978293 Medicago truncatula
Medtr4g093170 0.5kb downstream 0.5kb downstream 500 false chr4: 36977794-36978293 Medicago truncatula
Medtr4g093170 1.0kb upstream 1.0kb upstream 5759 true chr4: 36972035-36977793 Medicago truncatula
Medtr4g093170 1.0kb upstream 1.0kb upstream 1000 false chr4: 36972035-36973034 Medicago truncatula
Medtr4g093170 1.0kb downstream 1.0kb downstream 5759 true chr4: 36973035-36978793 Medicago truncatula
Medtr4g093170 1.0kb downstream 1.0kb downstream 1000 false chr4: 36977794-36978793 Medicago truncatula
Medtr4g093170 2.0kb upstream 2.0kb upstream 6759 true chr4: 36971035-36977793 Medicago truncatula
Medtr4g093170 2.0kb upstream 2.0kb upstream 2000 false chr4: 36971035-36973034 Medicago truncatula
Medtr4g093170 2.0kb downstream 2.0kb downstream 6759 true chr4: 36973035-36979793 Medicago truncatula
Medtr4g093170 2.0kb downstream 2.0kb downstream 2000 false chr4: 36977794-36979793 Medicago truncatula
Medtr4g093170 5.0kb upstream 5.0kb upstream 9759 true chr4: 36968035-36977793 Medicago truncatula
Medtr4g093170 5.0kb upstream 5.0kb upstream 5000 false chr4: 36968035-36973034 Medicago truncatula
Medtr4g093170 5.0kb downstream 5.0kb downstream 9759 true chr4: 36973035-36982793 Medicago truncatula
Medtr4g093170 5.0kb downstream 5.0kb downstream 5000 false chr4: 36977794-36982793 Medicago truncatula
Medtr4g093170 10.0kb upstream 10.0kb upstream 14759 true chr4: 36963035-36977793 Medicago truncatula
Medtr4g093170 10.0kb upstream 10.0kb upstream 10000 false chr4: 36963035-36973034 Medicago truncatula
Medtr4g093170 10.0kb downstream 10.0kb downstream 14759 true chr4: 36973035-36987793 Medicago truncatula
Medtr4g093170 10.0kb downstream 10.0kb downstream 10000 false chr4: 36977794-36987793 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302909 5265 Fabidae View MSA
124063122 5270 Rosid View MSA
123738991 5271 Pentapetalae View MSA
122791664 5272 Eudicot View MSA
122044147 5273 Angiosperm View MSA
121345604 5274 Embryophyte View MSA
123424668 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.339     High  
cufflinks 14.704     High Low
cufflinks 23.778     High  
cufflinks 34.768     High High
cufflinks 16.181     High  
cufflinks 18.816     High  
cufflinks 27.042     High  
cufflinks 17.309     High  
cufflinks 33.071     High High

0 Strain