Gene : Medtr4g093850 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR32370:SF6 - ROOT PHOTOTROPISM PROTEIN 3 Description:  phototropic-responsive NPH3 family protein
Genomic Order:  4721 Name:  ? Medtr4g093850
Secondary Identifier:  ? PAC:31111319
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g093850 0.5kb upstream 0.5kb upstream 6112 true chr4: 37212676-37218787 Medicago truncatula
Medtr4g093850 0.5kb upstream 0.5kb upstream 500 false chr4: 37218288-37218787 Medicago truncatula
Medtr4g093850 0.5kb downstream 0.5kb downstream 6112 true chr4: 37212176-37218287 Medicago truncatula
Medtr4g093850 0.5kb downstream 0.5kb downstream 500 false chr4: 37212176-37212675 Medicago truncatula
Medtr4g093850 1.0kb upstream 1.0kb upstream 6612 true chr4: 37212676-37219287 Medicago truncatula
Medtr4g093850 1.0kb upstream 1.0kb upstream 1000 false chr4: 37218288-37219287 Medicago truncatula
Medtr4g093850 1.0kb downstream 1.0kb downstream 6612 true chr4: 37211676-37218287 Medicago truncatula
Medtr4g093850 1.0kb downstream 1.0kb downstream 1000 false chr4: 37211676-37212675 Medicago truncatula
Medtr4g093850 2.0kb upstream 2.0kb upstream 7612 true chr4: 37212676-37220287 Medicago truncatula
Medtr4g093850 2.0kb upstream 2.0kb upstream 2000 false chr4: 37218288-37220287 Medicago truncatula
Medtr4g093850 2.0kb downstream 2.0kb downstream 7612 true chr4: 37210676-37218287 Medicago truncatula
Medtr4g093850 2.0kb downstream 2.0kb downstream 2000 false chr4: 37210676-37212675 Medicago truncatula
Medtr4g093850 5.0kb upstream 5.0kb upstream 10612 true chr4: 37212676-37223287 Medicago truncatula
Medtr4g093850 5.0kb upstream 5.0kb upstream 5000 false chr4: 37218288-37223287 Medicago truncatula
Medtr4g093850 5.0kb downstream 5.0kb downstream 10612 true chr4: 37207676-37218287 Medicago truncatula
Medtr4g093850 5.0kb downstream 5.0kb downstream 5000 false chr4: 37207676-37212675 Medicago truncatula
Medtr4g093850 10.0kb upstream 10.0kb upstream 15612 true chr4: 37212676-37228287 Medicago truncatula
Medtr4g093850 10.0kb upstream 10.0kb upstream 10000 false chr4: 37218288-37228287 Medicago truncatula
Medtr4g093850 10.0kb downstream 10.0kb downstream 15612 true chr4: 37202676-37218287 Medicago truncatula
Medtr4g093850 10.0kb downstream 10.0kb downstream 10000 false chr4: 37202676-37212675 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304495 5265 Fabidae View MSA
124063481 5270 Rosid View MSA
123746549 5271 Pentapetalae View MSA
122794613 5272 Eudicot View MSA
122049761 5273 Angiosperm View MSA
121347435 5274 Embryophyte View MSA
123380549 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.096        
cufflinks 1.501        
cufflinks 2.232       High
cufflinks 0.106        
cufflinks 1.511        
cufflinks 0.003     Low Low
cufflinks 0.077        
cufflinks 1.983        
cufflinks 0.03     Low  

0 Strain