Gene : Medtr4g094595 M. truncatula Mt4.0v1

Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Description:  starch synthase IV
Genomic Order:  4876 Name:  ? Medtr4g094595
Secondary Identifier:  ? PAC:31110929

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYCOGENSYNTH-PWY Medicago truncatula pathologic  
Mtruncatula PWY-622 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g094595 0.5kb upstream 0.5kb upstream 8910 true chr4: 38325033-38333942 Medicago truncatula
Medtr4g094595 0.5kb upstream 0.5kb upstream 500 false chr4: 38325033-38325532 Medicago truncatula
Medtr4g094595 0.5kb downstream 0.5kb downstream 8910 true chr4: 38325533-38334442 Medicago truncatula
Medtr4g094595 0.5kb downstream 0.5kb downstream 500 false chr4: 38333943-38334442 Medicago truncatula
Medtr4g094595 1.0kb upstream 1.0kb upstream 9410 true chr4: 38324533-38333942 Medicago truncatula
Medtr4g094595 1.0kb upstream 1.0kb upstream 1000 false chr4: 38324533-38325532 Medicago truncatula
Medtr4g094595 1.0kb downstream 1.0kb downstream 9410 true chr4: 38325533-38334942 Medicago truncatula
Medtr4g094595 1.0kb downstream 1.0kb downstream 1000 false chr4: 38333943-38334942 Medicago truncatula
Medtr4g094595 2.0kb upstream 2.0kb upstream 10410 true chr4: 38323533-38333942 Medicago truncatula
Medtr4g094595 2.0kb upstream 2.0kb upstream 2000 false chr4: 38323533-38325532 Medicago truncatula
Medtr4g094595 2.0kb downstream 2.0kb downstream 10410 true chr4: 38325533-38335942 Medicago truncatula
Medtr4g094595 2.0kb downstream 2.0kb downstream 2000 false chr4: 38333943-38335942 Medicago truncatula
Medtr4g094595 5.0kb upstream 5.0kb upstream 13410 true chr4: 38320533-38333942 Medicago truncatula
Medtr4g094595 5.0kb upstream 5.0kb upstream 5000 false chr4: 38320533-38325532 Medicago truncatula
Medtr4g094595 5.0kb downstream 5.0kb downstream 13410 true chr4: 38325533-38338942 Medicago truncatula
Medtr4g094595 5.0kb downstream 5.0kb downstream 5000 false chr4: 38333943-38338942 Medicago truncatula
Medtr4g094595 10.0kb upstream 10.0kb upstream 18410 true chr4: 38315533-38333942 Medicago truncatula
Medtr4g094595 10.0kb upstream 10.0kb upstream 10000 false chr4: 38315533-38325532 Medicago truncatula
Medtr4g094595 10.0kb downstream 10.0kb downstream 18410 true chr4: 38325533-38343942 Medicago truncatula
Medtr4g094595 10.0kb downstream 10.0kb downstream 10000 false chr4: 38333943-38343942 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301752 5265 Fabidae View MSA
124062542 5270 Rosid View MSA
123737586 5271 Pentapetalae View MSA
122786746 5272 Eudicot View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.566       High
cufflinks 2.582        
cufflinks 2.24        
cufflinks 0.107       Low
cufflinks 4.806       High
cufflinks 0.078     Low Low
cufflinks 0.415        
cufflinks 2.556        
cufflinks 0.401        

0 Strain