Gene : Medtr4g094715 M. truncatula Mt4.0v1
Defline:  (1 of 93) 3.2.1.15 - Polygalacturonase / Pectinase Description:  pectin lyase superfamily protein
Genomic Order:  4937 Name:  ? Medtr4g094715
Secondary Identifier:  ? PAC:31112429
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g094715 0.5kb upstream 0.5kb upstream 3240 true chr4: 38832140-38835379 Medicago truncatula
Medtr4g094715 0.5kb upstream 0.5kb upstream 500 false chr4: 38832140-38832639 Medicago truncatula
Medtr4g094715 0.5kb downstream 0.5kb downstream 3240 true chr4: 38832640-38835879 Medicago truncatula
Medtr4g094715 0.5kb downstream 0.5kb downstream 500 false chr4: 38835380-38835879 Medicago truncatula
Medtr4g094715 1.0kb upstream 1.0kb upstream 3740 true chr4: 38831640-38835379 Medicago truncatula
Medtr4g094715 1.0kb upstream 1.0kb upstream 1000 false chr4: 38831640-38832639 Medicago truncatula
Medtr4g094715 1.0kb downstream 1.0kb downstream 3740 true chr4: 38832640-38836379 Medicago truncatula
Medtr4g094715 1.0kb downstream 1.0kb downstream 1000 false chr4: 38835380-38836379 Medicago truncatula
Medtr4g094715 2.0kb upstream 2.0kb upstream 4740 true chr4: 38830640-38835379 Medicago truncatula
Medtr4g094715 2.0kb upstream 2.0kb upstream 2000 false chr4: 38830640-38832639 Medicago truncatula
Medtr4g094715 2.0kb downstream 2.0kb downstream 4740 true chr4: 38832640-38837379 Medicago truncatula
Medtr4g094715 2.0kb downstream 2.0kb downstream 2000 false chr4: 38835380-38837379 Medicago truncatula
Medtr4g094715 5.0kb upstream 5.0kb upstream 7740 true chr4: 38827640-38835379 Medicago truncatula
Medtr4g094715 5.0kb upstream 5.0kb upstream 5000 false chr4: 38827640-38832639 Medicago truncatula
Medtr4g094715 5.0kb downstream 5.0kb downstream 7740 true chr4: 38832640-38840379 Medicago truncatula
Medtr4g094715 5.0kb downstream 5.0kb downstream 5000 false chr4: 38835380-38840379 Medicago truncatula
Medtr4g094715 10.0kb upstream 10.0kb upstream 12740 true chr4: 38822640-38835379 Medicago truncatula
Medtr4g094715 10.0kb upstream 10.0kb upstream 10000 false chr4: 38822640-38832639 Medicago truncatula
Medtr4g094715 10.0kb downstream 10.0kb downstream 12740 true chr4: 38832640-38845379 Medicago truncatula
Medtr4g094715 10.0kb downstream 10.0kb downstream 10000 false chr4: 38835380-38845379 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312563 5265 Fabidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.273        
cufflinks 0.066     Low  
cufflinks 0.014     Low Low
cufflinks 0.153        
cufflinks 0.047     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.272        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.42       High

0 Strain