Gene : Medtr4g085890 M. truncatula Mt4.0v1
Defline:  (1 of 3) 6.4.1.4 - Methylcrotonoyl-CoA carboxylase / Methylcrotonyl-CoA carboxylase Description:  methylcrotonyl-CoA carboxylase beta chain, putative
Genomic Order:  4218 Name:  ? Medtr4g085890
Secondary Identifier:  ? PAC:31108427
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula LEU-DEG2-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g085890 0.5kb upstream 0.5kb upstream 4276 true chr4: 33589394-33593669 Medicago truncatula
Medtr4g085890 0.5kb upstream 0.5kb upstream 500 false chr4: 33593170-33593669 Medicago truncatula
Medtr4g085890 0.5kb downstream 0.5kb downstream 4276 true chr4: 33588894-33593169 Medicago truncatula
Medtr4g085890 0.5kb downstream 0.5kb downstream 500 false chr4: 33588894-33589393 Medicago truncatula
Medtr4g085890 1.0kb upstream 1.0kb upstream 4776 true chr4: 33589394-33594169 Medicago truncatula
Medtr4g085890 1.0kb upstream 1.0kb upstream 1000 false chr4: 33593170-33594169 Medicago truncatula
Medtr4g085890 1.0kb downstream 1.0kb downstream 4776 true chr4: 33588394-33593169 Medicago truncatula
Medtr4g085890 1.0kb downstream 1.0kb downstream 1000 false chr4: 33588394-33589393 Medicago truncatula
Medtr4g085890 2.0kb upstream 2.0kb upstream 5776 true chr4: 33589394-33595169 Medicago truncatula
Medtr4g085890 2.0kb upstream 2.0kb upstream 2000 false chr4: 33593170-33595169 Medicago truncatula
Medtr4g085890 2.0kb downstream 2.0kb downstream 5776 true chr4: 33587394-33593169 Medicago truncatula
Medtr4g085890 2.0kb downstream 2.0kb downstream 2000 false chr4: 33587394-33589393 Medicago truncatula
Medtr4g085890 5.0kb upstream 5.0kb upstream 8776 true chr4: 33589394-33598169 Medicago truncatula
Medtr4g085890 5.0kb upstream 5.0kb upstream 5000 false chr4: 33593170-33598169 Medicago truncatula
Medtr4g085890 5.0kb downstream 5.0kb downstream 8776 true chr4: 33584394-33593169 Medicago truncatula
Medtr4g085890 5.0kb downstream 5.0kb downstream 5000 false chr4: 33584394-33589393 Medicago truncatula
Medtr4g085890 10.0kb upstream 10.0kb upstream 13776 true chr4: 33589394-33603169 Medicago truncatula
Medtr4g085890 10.0kb upstream 10.0kb upstream 10000 false chr4: 33593170-33603169 Medicago truncatula
Medtr4g085890 10.0kb downstream 10.0kb downstream 13776 true chr4: 33579394-33593169 Medicago truncatula
Medtr4g085890 10.0kb downstream 10.0kb downstream 10000 false chr4: 33579394-33589393 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303334 5265 Fabidae View MSA
124061199 5270 Rosid View MSA
123740620 5271 Pentapetalae View MSA
122793626 5272 Eudicot View MSA
122044864 5273 Angiosperm View MSA
121344064 5274 Embryophyte View MSA
123424408 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 66.823     High  
cufflinks 84.504     High  
cufflinks 125.469     High High
cufflinks 34.517     High Low
cufflinks 44.449     High  
cufflinks 37.295     High  
cufflinks 53.766     High  
cufflinks 117.805     High High
cufflinks 30.695     High Low

0 Strain