Gene : Medtr4g086220 M. truncatula Mt4.0v1
Defline:  (1 of 209) PF00847 - AP2 domain (AP2) Description:  AP2/ERF domain transcription factor
Genomic Order:  4239 Name:  ? Medtr4g086220
Secondary Identifier:  ? PAC:31110308
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g086220 0.5kb upstream 0.5kb upstream 1601 true chr4: 33749580-33751180 Medicago truncatula
Medtr4g086220 0.5kb upstream 0.5kb upstream 500 false chr4: 33749580-33750079 Medicago truncatula
Medtr4g086220 0.5kb downstream 0.5kb downstream 1601 true chr4: 33750080-33751680 Medicago truncatula
Medtr4g086220 0.5kb downstream 0.5kb downstream 500 false chr4: 33751181-33751680 Medicago truncatula
Medtr4g086220 1.0kb upstream 1.0kb upstream 2101 true chr4: 33749080-33751180 Medicago truncatula
Medtr4g086220 1.0kb upstream 1.0kb upstream 1000 false chr4: 33749080-33750079 Medicago truncatula
Medtr4g086220 1.0kb downstream 1.0kb downstream 2101 true chr4: 33750080-33752180 Medicago truncatula
Medtr4g086220 1.0kb downstream 1.0kb downstream 1000 false chr4: 33751181-33752180 Medicago truncatula
Medtr4g086220 2.0kb upstream 2.0kb upstream 3101 true chr4: 33748080-33751180 Medicago truncatula
Medtr4g086220 2.0kb upstream 2.0kb upstream 2000 false chr4: 33748080-33750079 Medicago truncatula
Medtr4g086220 2.0kb downstream 2.0kb downstream 3101 true chr4: 33750080-33753180 Medicago truncatula
Medtr4g086220 2.0kb downstream 2.0kb downstream 2000 false chr4: 33751181-33753180 Medicago truncatula
Medtr4g086220 5.0kb upstream 5.0kb upstream 6101 true chr4: 33745080-33751180 Medicago truncatula
Medtr4g086220 5.0kb upstream 5.0kb upstream 5000 false chr4: 33745080-33750079 Medicago truncatula
Medtr4g086220 5.0kb downstream 5.0kb downstream 6101 true chr4: 33750080-33756180 Medicago truncatula
Medtr4g086220 5.0kb downstream 5.0kb downstream 5000 false chr4: 33751181-33756180 Medicago truncatula
Medtr4g086220 10.0kb upstream 10.0kb upstream 11101 true chr4: 33740080-33751180 Medicago truncatula
Medtr4g086220 10.0kb upstream 10.0kb upstream 10000 false chr4: 33740080-33750079 Medicago truncatula
Medtr4g086220 10.0kb downstream 10.0kb downstream 11101 true chr4: 33750080-33761180 Medicago truncatula
Medtr4g086220 10.0kb downstream 10.0kb downstream 10000 false chr4: 33751181-33761180 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302794 5265 Fabidae View MSA
124073164 5270 Rosid View MSA
123751106 5271 Pentapetalae View MSA
122797584 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.879        
cufflinks 0.953        
cufflinks 2.998        
cufflinks 5.313        
cufflinks 0.638       Low
cufflinks 5.546        
cufflinks 4.254        
cufflinks 0.592       Low
cufflinks 13.236     High High

0 Strain