Gene : Medtr4g085820 M. truncatula Mt4.0v1
Defline:  (1 of 3) PF01936//PF12872 - NYN domain (NYN) // OST-HTH/LOTUS domain (OST-HTH) Description:  endonuclease or glycosyl hydrolase
Genomic Order:  4215 Name:  ? Medtr4g085820
Secondary Identifier:  ? PAC:31111317
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g085820 0.5kb upstream 0.5kb upstream 2567 true chr4: 33565511-33568077 Medicago truncatula
Medtr4g085820 0.5kb upstream 0.5kb upstream 500 false chr4: 33567578-33568077 Medicago truncatula
Medtr4g085820 0.5kb downstream 0.5kb downstream 2567 true chr4: 33565011-33567577 Medicago truncatula
Medtr4g085820 0.5kb downstream 0.5kb downstream 500 false chr4: 33565011-33565510 Medicago truncatula
Medtr4g085820 1.0kb upstream 1.0kb upstream 3067 true chr4: 33565511-33568577 Medicago truncatula
Medtr4g085820 1.0kb upstream 1.0kb upstream 1000 false chr4: 33567578-33568577 Medicago truncatula
Medtr4g085820 1.0kb downstream 1.0kb downstream 3067 true chr4: 33564511-33567577 Medicago truncatula
Medtr4g085820 1.0kb downstream 1.0kb downstream 1000 false chr4: 33564511-33565510 Medicago truncatula
Medtr4g085820 2.0kb upstream 2.0kb upstream 4067 true chr4: 33565511-33569577 Medicago truncatula
Medtr4g085820 2.0kb upstream 2.0kb upstream 2000 false chr4: 33567578-33569577 Medicago truncatula
Medtr4g085820 2.0kb downstream 2.0kb downstream 4067 true chr4: 33563511-33567577 Medicago truncatula
Medtr4g085820 2.0kb downstream 2.0kb downstream 2000 false chr4: 33563511-33565510 Medicago truncatula
Medtr4g085820 5.0kb upstream 5.0kb upstream 7067 true chr4: 33565511-33572577 Medicago truncatula
Medtr4g085820 5.0kb upstream 5.0kb upstream 5000 false chr4: 33567578-33572577 Medicago truncatula
Medtr4g085820 5.0kb downstream 5.0kb downstream 7067 true chr4: 33560511-33567577 Medicago truncatula
Medtr4g085820 5.0kb downstream 5.0kb downstream 5000 false chr4: 33560511-33565510 Medicago truncatula
Medtr4g085820 10.0kb upstream 10.0kb upstream 12067 true chr4: 33565511-33577577 Medicago truncatula
Medtr4g085820 10.0kb upstream 10.0kb upstream 10000 false chr4: 33567578-33577577 Medicago truncatula
Medtr4g085820 10.0kb downstream 10.0kb downstream 12067 true chr4: 33555511-33567577 Medicago truncatula
Medtr4g085820 10.0kb downstream 10.0kb downstream 10000 false chr4: 33555511-33565510 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306779 5265 Fabidae View MSA
124060923 5270 Rosid View MSA
123747384 5271 Pentapetalae View MSA
122791498 5272 Eudicot View MSA
122044167 5273 Angiosperm View MSA
121346389 5274 Embryophyte View MSA
123380376 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.62     High  
cufflinks 23.331     High  
cufflinks 21.982     High  
cufflinks 11.411     High  
cufflinks 18.323     High  
cufflinks 6.704       Low
cufflinks 14.689     High  
cufflinks 21.342     High  
cufflinks 19.58     High  

0 Strain