Gene : Medtr4g084680 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  4153 Name:  ? Medtr4g084680
Secondary Identifier:  ? PAC:31106631
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g084680 0.5kb upstream 0.5kb upstream 1462 true chr4: 33005378-33006839 Medicago truncatula
Medtr4g084680 0.5kb upstream 0.5kb upstream 500 false chr4: 33005378-33005877 Medicago truncatula
Medtr4g084680 0.5kb downstream 0.5kb downstream 1462 true chr4: 33005878-33007339 Medicago truncatula
Medtr4g084680 0.5kb downstream 0.5kb downstream 500 false chr4: 33006840-33007339 Medicago truncatula
Medtr4g084680 1.0kb upstream 1.0kb upstream 1962 true chr4: 33004878-33006839 Medicago truncatula
Medtr4g084680 1.0kb upstream 1.0kb upstream 1000 false chr4: 33004878-33005877 Medicago truncatula
Medtr4g084680 1.0kb downstream 1.0kb downstream 1962 true chr4: 33005878-33007839 Medicago truncatula
Medtr4g084680 1.0kb downstream 1.0kb downstream 1000 false chr4: 33006840-33007839 Medicago truncatula
Medtr4g084680 2.0kb upstream 2.0kb upstream 2962 true chr4: 33003878-33006839 Medicago truncatula
Medtr4g084680 2.0kb upstream 2.0kb upstream 2000 false chr4: 33003878-33005877 Medicago truncatula
Medtr4g084680 2.0kb downstream 2.0kb downstream 2962 true chr4: 33005878-33008839 Medicago truncatula
Medtr4g084680 2.0kb downstream 2.0kb downstream 2000 false chr4: 33006840-33008839 Medicago truncatula
Medtr4g084680 5.0kb upstream 5.0kb upstream 5962 true chr4: 33000878-33006839 Medicago truncatula
Medtr4g084680 5.0kb upstream 5.0kb upstream 5000 false chr4: 33000878-33005877 Medicago truncatula
Medtr4g084680 5.0kb downstream 5.0kb downstream 5962 true chr4: 33005878-33011839 Medicago truncatula
Medtr4g084680 5.0kb downstream 5.0kb downstream 5000 false chr4: 33006840-33011839 Medicago truncatula
Medtr4g084680 10.0kb upstream 10.0kb upstream 10962 true chr4: 32995878-33006839 Medicago truncatula
Medtr4g084680 10.0kb upstream 10.0kb upstream 10000 false chr4: 32995878-33005877 Medicago truncatula
Medtr4g084680 10.0kb downstream 10.0kb downstream 10962 true chr4: 33005878-33016839 Medicago truncatula
Medtr4g084680 10.0kb downstream 10.0kb downstream 10000 false chr4: 33006840-33016839 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027219 5273 Angiosperm View MSA
122295229 5265 Fabidae View MSA
124070657 5270 Rosid View MSA
123745654 5271 Pentapetalae View MSA
122794629 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.626        
cufflinks 0.941        
cufflinks 1.631        
cufflinks 0.629        
cufflinks 3.057       High
cufflinks 0.063     Low Low
cufflinks 1.233        
cufflinks 1.289        
cufflinks 0.926        

0 Strain