Gene : Medtr4g085590 M. truncatula Mt4.0v1
Defline:  (1 of 9) 2.1.1.104 - Caffeoyl-CoA O-methyltransferase / Trans-caffeoyl-CoA 3-O-methyltransferase Description:  caffeoyl-CoA 3-O-methyltransferase
Genomic Order:  4201 Name:  ? Medtr4g085590
Secondary Identifier:  ? PAC:31112823
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1121 Medicago truncatula pathologic  
Mtruncatula PWY-361 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g085590 0.5kb upstream 0.5kb upstream 2214 true chr4: 33452934-33455147 Medicago truncatula
Medtr4g085590 0.5kb upstream 0.5kb upstream 500 false chr4: 33454648-33455147 Medicago truncatula
Medtr4g085590 0.5kb downstream 0.5kb downstream 2214 true chr4: 33452434-33454647 Medicago truncatula
Medtr4g085590 0.5kb downstream 0.5kb downstream 500 false chr4: 33452434-33452933 Medicago truncatula
Medtr4g085590 1.0kb upstream 1.0kb upstream 2714 true chr4: 33452934-33455647 Medicago truncatula
Medtr4g085590 1.0kb upstream 1.0kb upstream 1000 false chr4: 33454648-33455647 Medicago truncatula
Medtr4g085590 1.0kb downstream 1.0kb downstream 2714 true chr4: 33451934-33454647 Medicago truncatula
Medtr4g085590 1.0kb downstream 1.0kb downstream 1000 false chr4: 33451934-33452933 Medicago truncatula
Medtr4g085590 2.0kb upstream 2.0kb upstream 3714 true chr4: 33452934-33456647 Medicago truncatula
Medtr4g085590 2.0kb upstream 2.0kb upstream 2000 false chr4: 33454648-33456647 Medicago truncatula
Medtr4g085590 2.0kb downstream 2.0kb downstream 3714 true chr4: 33450934-33454647 Medicago truncatula
Medtr4g085590 2.0kb downstream 2.0kb downstream 2000 false chr4: 33450934-33452933 Medicago truncatula
Medtr4g085590 5.0kb upstream 5.0kb upstream 6714 true chr4: 33452934-33459647 Medicago truncatula
Medtr4g085590 5.0kb upstream 5.0kb upstream 5000 false chr4: 33454648-33459647 Medicago truncatula
Medtr4g085590 5.0kb downstream 5.0kb downstream 6714 true chr4: 33447934-33454647 Medicago truncatula
Medtr4g085590 5.0kb downstream 5.0kb downstream 5000 false chr4: 33447934-33452933 Medicago truncatula
Medtr4g085590 10.0kb upstream 10.0kb upstream 11714 true chr4: 33452934-33464647 Medicago truncatula
Medtr4g085590 10.0kb upstream 10.0kb upstream 10000 false chr4: 33454648-33464647 Medicago truncatula
Medtr4g085590 10.0kb downstream 10.0kb downstream 11714 true chr4: 33442934-33454647 Medicago truncatula
Medtr4g085590 10.0kb downstream 10.0kb downstream 10000 false chr4: 33442934-33452933 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303546 5265 Fabidae View MSA
124070061 5270 Rosid View MSA
123746911 5271 Pentapetalae View MSA
122790683 5272 Eudicot View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.293     High Low
cufflinks 138.517     High  
cufflinks 39.426     High Low
cufflinks 175.446     High High
cufflinks 101.99     High  
cufflinks 95.803     High  
cufflinks 122.024     High  
cufflinks 65.608     High  
cufflinks 152.42     High  

0 Strain