Gene : Medtr4g081350 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12161:SF13 - REGULATOR OF VPS4 ACTIVITY PROTEIN-RELATED Description:  regulator of Vps4 activity in the MVB pathway protein
Genomic Order:  3950 Name:  ? Medtr4g081350
Secondary Identifier:  ? PAC:31111419
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g081350 0.5kb upstream 0.5kb upstream 3736 true chr4: 31532397-31536132 Medicago truncatula
Medtr4g081350 0.5kb upstream 0.5kb upstream 500 false chr4: 31532397-31532896 Medicago truncatula
Medtr4g081350 0.5kb downstream 0.5kb downstream 3736 true chr4: 31532897-31536632 Medicago truncatula
Medtr4g081350 0.5kb downstream 0.5kb downstream 500 false chr4: 31536133-31536632 Medicago truncatula
Medtr4g081350 1.0kb upstream 1.0kb upstream 4236 true chr4: 31531897-31536132 Medicago truncatula
Medtr4g081350 1.0kb upstream 1.0kb upstream 1000 false chr4: 31531897-31532896 Medicago truncatula
Medtr4g081350 1.0kb downstream 1.0kb downstream 4236 true chr4: 31532897-31537132 Medicago truncatula
Medtr4g081350 1.0kb downstream 1.0kb downstream 1000 false chr4: 31536133-31537132 Medicago truncatula
Medtr4g081350 2.0kb upstream 2.0kb upstream 5236 true chr4: 31530897-31536132 Medicago truncatula
Medtr4g081350 2.0kb upstream 2.0kb upstream 2000 false chr4: 31530897-31532896 Medicago truncatula
Medtr4g081350 2.0kb downstream 2.0kb downstream 5236 true chr4: 31532897-31538132 Medicago truncatula
Medtr4g081350 2.0kb downstream 2.0kb downstream 2000 false chr4: 31536133-31538132 Medicago truncatula
Medtr4g081350 5.0kb upstream 5.0kb upstream 8236 true chr4: 31527897-31536132 Medicago truncatula
Medtr4g081350 5.0kb upstream 5.0kb upstream 5000 false chr4: 31527897-31532896 Medicago truncatula
Medtr4g081350 5.0kb downstream 5.0kb downstream 8236 true chr4: 31532897-31541132 Medicago truncatula
Medtr4g081350 5.0kb downstream 5.0kb downstream 5000 false chr4: 31536133-31541132 Medicago truncatula
Medtr4g081350 10.0kb upstream 10.0kb upstream 13236 true chr4: 31522897-31536132 Medicago truncatula
Medtr4g081350 10.0kb upstream 10.0kb upstream 10000 false chr4: 31522897-31532896 Medicago truncatula
Medtr4g081350 10.0kb downstream 10.0kb downstream 13236 true chr4: 31532897-31546132 Medicago truncatula
Medtr4g081350 10.0kb downstream 10.0kb downstream 10000 false chr4: 31536133-31546132 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026573 5273 Angiosperm View MSA
122298193 5265 Fabidae View MSA
124050952 5270 Rosid View MSA
123738388 5271 Pentapetalae View MSA
122790971 5272 Eudicot View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.069       Low
cufflinks 0.109        
cufflinks 0.216        
cufflinks 0.232        
cufflinks 0.149        
cufflinks 0.057     Low Low
cufflinks 0.203        
cufflinks 0.113        
cufflinks 0.229        

0 Strain