Gene : Medtr4g078350 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR13935:SF53 - BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN Description:  helix loop helix DNA-binding domain protein
Genomic Order:  3757 Name:  ? Medtr4g078350
Secondary Identifier:  ? PAC:31107183
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g078350 0.5kb upstream 0.5kb upstream 1327 true chr4: 30194637-30195963 Medicago truncatula
Medtr4g078350 0.5kb upstream 0.5kb upstream 500 false chr4: 30194637-30195136 Medicago truncatula
Medtr4g078350 0.5kb downstream 0.5kb downstream 1327 true chr4: 30195137-30196463 Medicago truncatula
Medtr4g078350 0.5kb downstream 0.5kb downstream 500 false chr4: 30195964-30196463 Medicago truncatula
Medtr4g078350 1.0kb upstream 1.0kb upstream 1827 true chr4: 30194137-30195963 Medicago truncatula
Medtr4g078350 1.0kb upstream 1.0kb upstream 1000 false chr4: 30194137-30195136 Medicago truncatula
Medtr4g078350 1.0kb downstream 1.0kb downstream 1827 true chr4: 30195137-30196963 Medicago truncatula
Medtr4g078350 1.0kb downstream 1.0kb downstream 1000 false chr4: 30195964-30196963 Medicago truncatula
Medtr4g078350 2.0kb upstream 2.0kb upstream 2827 true chr4: 30193137-30195963 Medicago truncatula
Medtr4g078350 2.0kb upstream 2.0kb upstream 2000 false chr4: 30193137-30195136 Medicago truncatula
Medtr4g078350 2.0kb downstream 2.0kb downstream 2827 true chr4: 30195137-30197963 Medicago truncatula
Medtr4g078350 2.0kb downstream 2.0kb downstream 2000 false chr4: 30195964-30197963 Medicago truncatula
Medtr4g078350 5.0kb upstream 5.0kb upstream 5827 true chr4: 30190137-30195963 Medicago truncatula
Medtr4g078350 5.0kb upstream 5.0kb upstream 5000 false chr4: 30190137-30195136 Medicago truncatula
Medtr4g078350 5.0kb downstream 5.0kb downstream 5827 true chr4: 30195137-30200963 Medicago truncatula
Medtr4g078350 5.0kb downstream 5.0kb downstream 5000 false chr4: 30195964-30200963 Medicago truncatula
Medtr4g078350 10.0kb upstream 10.0kb upstream 10827 true chr4: 30185137-30195963 Medicago truncatula
Medtr4g078350 10.0kb upstream 10.0kb upstream 10000 false chr4: 30185137-30195136 Medicago truncatula
Medtr4g078350 10.0kb downstream 10.0kb downstream 10827 true chr4: 30195137-30205963 Medicago truncatula
Medtr4g078350 10.0kb downstream 10.0kb downstream 10000 false chr4: 30195964-30205963 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040931 5273 Angiosperm View MSA
122308200 5265 Fabidae View MSA
124070825 5270 Rosid View MSA
123745471 5271 Pentapetalae View MSA
122795033 5272 Eudicot View MSA
121309769 5274 Embryophyte View MSA
123347432 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.379        
cufflinks 0.11       Low
cufflinks 0.449        
cufflinks 0.335        
cufflinks 0.155       Low
cufflinks 1.066        
cufflinks 2.9       High
cufflinks 0.254        
cufflinks 0.731        

0 Strain