Gene : Medtr4g078730 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE Description:  chalcone synthase family protein, putative
Genomic Order:  3785 Name:  ? Medtr4g078730
Secondary Identifier:  ? PAC:31108520
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g078730 0.5kb upstream 0.5kb upstream 1782 true chr4: 30428031-30429812 Medicago truncatula
Medtr4g078730 0.5kb upstream 0.5kb upstream 500 false chr4: 30428031-30428530 Medicago truncatula
Medtr4g078730 0.5kb downstream 0.5kb downstream 1782 true chr4: 30428531-30430312 Medicago truncatula
Medtr4g078730 0.5kb downstream 0.5kb downstream 500 false chr4: 30429813-30430312 Medicago truncatula
Medtr4g078730 1.0kb upstream 1.0kb upstream 2282 true chr4: 30427531-30429812 Medicago truncatula
Medtr4g078730 1.0kb upstream 1.0kb upstream 1000 false chr4: 30427531-30428530 Medicago truncatula
Medtr4g078730 1.0kb downstream 1.0kb downstream 2282 true chr4: 30428531-30430812 Medicago truncatula
Medtr4g078730 1.0kb downstream 1.0kb downstream 1000 false chr4: 30429813-30430812 Medicago truncatula
Medtr4g078730 2.0kb upstream 2.0kb upstream 3282 true chr4: 30426531-30429812 Medicago truncatula
Medtr4g078730 2.0kb upstream 2.0kb upstream 2000 false chr4: 30426531-30428530 Medicago truncatula
Medtr4g078730 2.0kb downstream 2.0kb downstream 3282 true chr4: 30428531-30431812 Medicago truncatula
Medtr4g078730 2.0kb downstream 2.0kb downstream 2000 false chr4: 30429813-30431812 Medicago truncatula
Medtr4g078730 5.0kb upstream 5.0kb upstream 6282 true chr4: 30423531-30429812 Medicago truncatula
Medtr4g078730 5.0kb upstream 5.0kb upstream 5000 false chr4: 30423531-30428530 Medicago truncatula
Medtr4g078730 5.0kb downstream 5.0kb downstream 6282 true chr4: 30428531-30434812 Medicago truncatula
Medtr4g078730 5.0kb downstream 5.0kb downstream 5000 false chr4: 30429813-30434812 Medicago truncatula
Medtr4g078730 10.0kb upstream 10.0kb upstream 11282 true chr4: 30418531-30429812 Medicago truncatula
Medtr4g078730 10.0kb upstream 10.0kb upstream 10000 false chr4: 30418531-30428530 Medicago truncatula
Medtr4g078730 10.0kb downstream 10.0kb downstream 11282 true chr4: 30428531-30439812 Medicago truncatula
Medtr4g078730 10.0kb downstream 10.0kb downstream 10000 false chr4: 30429813-30439812 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305000 5265 Fabidae View MSA
124068304 5270 Rosid View MSA
123739380 5271 Pentapetalae View MSA
122792095 5272 Eudicot View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.039     Low  
cufflinks 0.041     Low  
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.026     Low  
cufflinks 0.052     Low High

0 Strain