Gene : Medtr4g080140 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11879//PTHR11879:SF18 - ASPARTATE AMINOTRANSFERASE Description:  aspartate aminotransferase
Genomic Order:  3883 Name:  ? Medtr4g080140
Secondary Identifier:  ? PAC:31113192
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6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ASPARTATE-DEG1-PWY Medicago truncatula pathologic  
Mtruncatula ASPARTATESYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-3001 Medicago truncatula pathologic  
Mtruncatula PWY-7115 Medicago truncatula pathologic  
Mtruncatula PWY-7117 Medicago truncatula pathologic  
Mtruncatula THRESYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g080140 0.5kb upstream 0.5kb upstream 6984 true chr4: 31071987-31078970 Medicago truncatula
Medtr4g080140 0.5kb upstream 0.5kb upstream 500 false chr4: 31078471-31078970 Medicago truncatula
Medtr4g080140 0.5kb downstream 0.5kb downstream 6984 true chr4: 31071487-31078470 Medicago truncatula
Medtr4g080140 0.5kb downstream 0.5kb downstream 500 false chr4: 31071487-31071986 Medicago truncatula
Medtr4g080140 1.0kb upstream 1.0kb upstream 7484 true chr4: 31071987-31079470 Medicago truncatula
Medtr4g080140 1.0kb upstream 1.0kb upstream 1000 false chr4: 31078471-31079470 Medicago truncatula
Medtr4g080140 1.0kb downstream 1.0kb downstream 7484 true chr4: 31070987-31078470 Medicago truncatula
Medtr4g080140 1.0kb downstream 1.0kb downstream 1000 false chr4: 31070987-31071986 Medicago truncatula
Medtr4g080140 2.0kb upstream 2.0kb upstream 8484 true chr4: 31071987-31080470 Medicago truncatula
Medtr4g080140 2.0kb upstream 2.0kb upstream 2000 false chr4: 31078471-31080470 Medicago truncatula
Medtr4g080140 2.0kb downstream 2.0kb downstream 8484 true chr4: 31069987-31078470 Medicago truncatula
Medtr4g080140 2.0kb downstream 2.0kb downstream 2000 false chr4: 31069987-31071986 Medicago truncatula
Medtr4g080140 5.0kb upstream 5.0kb upstream 11484 true chr4: 31071987-31083470 Medicago truncatula
Medtr4g080140 5.0kb upstream 5.0kb upstream 5000 false chr4: 31078471-31083470 Medicago truncatula
Medtr4g080140 5.0kb downstream 5.0kb downstream 11484 true chr4: 31066987-31078470 Medicago truncatula
Medtr4g080140 5.0kb downstream 5.0kb downstream 5000 false chr4: 31066987-31071986 Medicago truncatula
Medtr4g080140 10.0kb upstream 10.0kb upstream 16484 true chr4: 31071987-31088470 Medicago truncatula
Medtr4g080140 10.0kb upstream 10.0kb upstream 10000 false chr4: 31078471-31088470 Medicago truncatula
Medtr4g080140 10.0kb downstream 10.0kb downstream 16484 true chr4: 31061987-31078470 Medicago truncatula
Medtr4g080140 10.0kb downstream 10.0kb downstream 10000 false chr4: 31061987-31071986 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301166 5265 Fabidae View MSA
124063482 5270 Rosid View MSA
123737145 5271 Pentapetalae View MSA
122793092 5272 Eudicot View MSA
122046072 5273 Angiosperm View MSA
121344214 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.355       Low
cufflinks 4.821        
cufflinks 5.542       High
cufflinks 3.035        
cufflinks 4.614        
cufflinks 2.706       Low
cufflinks 5.217        
cufflinks 5.359        
cufflinks 3.619        

0 Strain