Gene : Medtr4g079930 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Description:  DUF640 family protein
Genomic Order:  3864 Name:  ? Medtr4g079930
Secondary Identifier:  ? PAC:31106463
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g079930 0.5kb upstream 0.5kb upstream 10735 true chr4: 30941151-30951885 Medicago truncatula
Medtr4g079930 0.5kb upstream 0.5kb upstream 500 false chr4: 30941151-30941650 Medicago truncatula
Medtr4g079930 0.5kb downstream 0.5kb downstream 10735 true chr4: 30941651-30952385 Medicago truncatula
Medtr4g079930 0.5kb downstream 0.5kb downstream 500 false chr4: 30951886-30952385 Medicago truncatula
Medtr4g079930 1.0kb upstream 1.0kb upstream 11235 true chr4: 30940651-30951885 Medicago truncatula
Medtr4g079930 1.0kb upstream 1.0kb upstream 1000 false chr4: 30940651-30941650 Medicago truncatula
Medtr4g079930 1.0kb downstream 1.0kb downstream 11235 true chr4: 30941651-30952885 Medicago truncatula
Medtr4g079930 1.0kb downstream 1.0kb downstream 1000 false chr4: 30951886-30952885 Medicago truncatula
Medtr4g079930 2.0kb upstream 2.0kb upstream 12235 true chr4: 30939651-30951885 Medicago truncatula
Medtr4g079930 2.0kb upstream 2.0kb upstream 2000 false chr4: 30939651-30941650 Medicago truncatula
Medtr4g079930 2.0kb downstream 2.0kb downstream 12235 true chr4: 30941651-30953885 Medicago truncatula
Medtr4g079930 2.0kb downstream 2.0kb downstream 2000 false chr4: 30951886-30953885 Medicago truncatula
Medtr4g079930 5.0kb upstream 5.0kb upstream 15235 true chr4: 30936651-30951885 Medicago truncatula
Medtr4g079930 5.0kb upstream 5.0kb upstream 5000 false chr4: 30936651-30941650 Medicago truncatula
Medtr4g079930 5.0kb downstream 5.0kb downstream 15235 true chr4: 30941651-30956885 Medicago truncatula
Medtr4g079930 5.0kb downstream 5.0kb downstream 5000 false chr4: 30951886-30956885 Medicago truncatula
Medtr4g079930 10.0kb upstream 10.0kb upstream 20235 true chr4: 30931651-30951885 Medicago truncatula
Medtr4g079930 10.0kb upstream 10.0kb upstream 10000 false chr4: 30931651-30941650 Medicago truncatula
Medtr4g079930 10.0kb downstream 10.0kb downstream 20235 true chr4: 30941651-30961885 Medicago truncatula
Medtr4g079930 10.0kb downstream 10.0kb downstream 10000 false chr4: 30951886-30961885 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122289829 5265 Fabidae View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.018     Low  
cufflinks 0.086        
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.145       High
cufflinks 0.002     Low Low
cufflinks 0.073     Low  

0 Strain