Gene : Medtr4g069020 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Description:  allene oxide cyclase
Genomic Order:  3134 Name:  ? Medtr4g069020
Secondary Identifier:  ? PAC:31112037
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-735 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g069020 0.5kb upstream 0.5kb upstream 1529 true chr4: 25914493-25916021 Medicago truncatula
Medtr4g069020 0.5kb upstream 0.5kb upstream 500 false chr4: 25915522-25916021 Medicago truncatula
Medtr4g069020 0.5kb downstream 0.5kb downstream 1529 true chr4: 25913993-25915521 Medicago truncatula
Medtr4g069020 0.5kb downstream 0.5kb downstream 500 false chr4: 25913993-25914492 Medicago truncatula
Medtr4g069020 1.0kb upstream 1.0kb upstream 2029 true chr4: 25914493-25916521 Medicago truncatula
Medtr4g069020 1.0kb upstream 1.0kb upstream 1000 false chr4: 25915522-25916521 Medicago truncatula
Medtr4g069020 1.0kb downstream 1.0kb downstream 2029 true chr4: 25913493-25915521 Medicago truncatula
Medtr4g069020 1.0kb downstream 1.0kb downstream 1000 false chr4: 25913493-25914492 Medicago truncatula
Medtr4g069020 2.0kb upstream 2.0kb upstream 3029 true chr4: 25914493-25917521 Medicago truncatula
Medtr4g069020 2.0kb upstream 2.0kb upstream 2000 false chr4: 25915522-25917521 Medicago truncatula
Medtr4g069020 2.0kb downstream 2.0kb downstream 3029 true chr4: 25912493-25915521 Medicago truncatula
Medtr4g069020 2.0kb downstream 2.0kb downstream 2000 false chr4: 25912493-25914492 Medicago truncatula
Medtr4g069020 5.0kb upstream 5.0kb upstream 6029 true chr4: 25914493-25920521 Medicago truncatula
Medtr4g069020 5.0kb upstream 5.0kb upstream 5000 false chr4: 25915522-25920521 Medicago truncatula
Medtr4g069020 5.0kb downstream 5.0kb downstream 6029 true chr4: 25909493-25915521 Medicago truncatula
Medtr4g069020 5.0kb downstream 5.0kb downstream 5000 false chr4: 25909493-25914492 Medicago truncatula
Medtr4g069020 10.0kb upstream 10.0kb upstream 11029 true chr4: 25914493-25925521 Medicago truncatula
Medtr4g069020 10.0kb upstream 10.0kb upstream 10000 false chr4: 25915522-25925521 Medicago truncatula
Medtr4g069020 10.0kb downstream 10.0kb downstream 11029 true chr4: 25904493-25915521 Medicago truncatula
Medtr4g069020 10.0kb downstream 10.0kb downstream 10000 false chr4: 25904493-25914492 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313475 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.246        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.036     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.336        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain