Gene : Medtr4g073360 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Description:  photosystem II reaction center protein D
Genomic Order:  3431 Name:  ? Medtr4g073360
Secondary Identifier:  ? PAC:31113083
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g073360 0.5kb upstream 0.5kb upstream 2081 true chr4: 27765205-27767285 Medicago truncatula
Medtr4g073360 0.5kb upstream 0.5kb upstream 500 false chr4: 27766786-27767285 Medicago truncatula
Medtr4g073360 0.5kb downstream 0.5kb downstream 2081 true chr4: 27764705-27766785 Medicago truncatula
Medtr4g073360 0.5kb downstream 0.5kb downstream 500 false chr4: 27764705-27765204 Medicago truncatula
Medtr4g073360 1.0kb upstream 1.0kb upstream 2581 true chr4: 27765205-27767785 Medicago truncatula
Medtr4g073360 1.0kb upstream 1.0kb upstream 1000 false chr4: 27766786-27767785 Medicago truncatula
Medtr4g073360 1.0kb downstream 1.0kb downstream 2581 true chr4: 27764205-27766785 Medicago truncatula
Medtr4g073360 1.0kb downstream 1.0kb downstream 1000 false chr4: 27764205-27765204 Medicago truncatula
Medtr4g073360 2.0kb upstream 2.0kb upstream 3581 true chr4: 27765205-27768785 Medicago truncatula
Medtr4g073360 2.0kb upstream 2.0kb upstream 2000 false chr4: 27766786-27768785 Medicago truncatula
Medtr4g073360 2.0kb downstream 2.0kb downstream 3581 true chr4: 27763205-27766785 Medicago truncatula
Medtr4g073360 2.0kb downstream 2.0kb downstream 2000 false chr4: 27763205-27765204 Medicago truncatula
Medtr4g073360 5.0kb upstream 5.0kb upstream 6581 true chr4: 27765205-27771785 Medicago truncatula
Medtr4g073360 5.0kb upstream 5.0kb upstream 5000 false chr4: 27766786-27771785 Medicago truncatula
Medtr4g073360 5.0kb downstream 5.0kb downstream 6581 true chr4: 27760205-27766785 Medicago truncatula
Medtr4g073360 5.0kb downstream 5.0kb downstream 5000 false chr4: 27760205-27765204 Medicago truncatula
Medtr4g073360 10.0kb upstream 10.0kb upstream 11581 true chr4: 27765205-27776785 Medicago truncatula
Medtr4g073360 10.0kb upstream 10.0kb upstream 10000 false chr4: 27766786-27776785 Medicago truncatula
Medtr4g073360 10.0kb downstream 10.0kb downstream 11581 true chr4: 27755205-27766785 Medicago truncatula
Medtr4g073360 10.0kb downstream 10.0kb downstream 10000 false chr4: 27755205-27765204 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298276 5265 Fabidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.253       Low
cufflinks 39.145     High  
cufflinks 57.628     High High
cufflinks 0.431        
cufflinks 31.804     High  
cufflinks 1.197        
cufflinks 0.282        
cufflinks 46.881     High High
cufflinks 0.336        

0 Strain