Gene : Medtr4g074640 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11777:SF18 - ALANINE--TRNA LIGASE, CYTOPLASMIC Description:  alanine-tRNA ligase
Genomic Order:  3515 Name:  ? Medtr4g074640
Secondary Identifier:  ? PAC:31108700
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g074640 0.5kb upstream 0.5kb upstream 14770 true chr4: 28430449-28445218 Medicago truncatula
Medtr4g074640 0.5kb upstream 0.5kb upstream 500 false chr4: 28430449-28430948 Medicago truncatula
Medtr4g074640 0.5kb downstream 0.5kb downstream 14770 true chr4: 28430949-28445718 Medicago truncatula
Medtr4g074640 0.5kb downstream 0.5kb downstream 500 false chr4: 28445219-28445718 Medicago truncatula
Medtr4g074640 1.0kb upstream 1.0kb upstream 15270 true chr4: 28429949-28445218 Medicago truncatula
Medtr4g074640 1.0kb upstream 1.0kb upstream 1000 false chr4: 28429949-28430948 Medicago truncatula
Medtr4g074640 1.0kb downstream 1.0kb downstream 15270 true chr4: 28430949-28446218 Medicago truncatula
Medtr4g074640 1.0kb downstream 1.0kb downstream 1000 false chr4: 28445219-28446218 Medicago truncatula
Medtr4g074640 2.0kb upstream 2.0kb upstream 16270 true chr4: 28428949-28445218 Medicago truncatula
Medtr4g074640 2.0kb upstream 2.0kb upstream 2000 false chr4: 28428949-28430948 Medicago truncatula
Medtr4g074640 2.0kb downstream 2.0kb downstream 16270 true chr4: 28430949-28447218 Medicago truncatula
Medtr4g074640 2.0kb downstream 2.0kb downstream 2000 false chr4: 28445219-28447218 Medicago truncatula
Medtr4g074640 5.0kb upstream 5.0kb upstream 19270 true chr4: 28425949-28445218 Medicago truncatula
Medtr4g074640 5.0kb upstream 5.0kb upstream 5000 false chr4: 28425949-28430948 Medicago truncatula
Medtr4g074640 5.0kb downstream 5.0kb downstream 19270 true chr4: 28430949-28450218 Medicago truncatula
Medtr4g074640 5.0kb downstream 5.0kb downstream 5000 false chr4: 28445219-28450218 Medicago truncatula
Medtr4g074640 10.0kb upstream 10.0kb upstream 24270 true chr4: 28420949-28445218 Medicago truncatula
Medtr4g074640 10.0kb upstream 10.0kb upstream 10000 false chr4: 28420949-28430948 Medicago truncatula
Medtr4g074640 10.0kb downstream 10.0kb downstream 24270 true chr4: 28430949-28455218 Medicago truncatula
Medtr4g074640 10.0kb downstream 10.0kb downstream 10000 false chr4: 28445219-28455218 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307158 5265 Fabidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.783     High  
cufflinks 14.964     High  
cufflinks 17.879     High  
cufflinks 4.346       Low
cufflinks 16.682     High  
cufflinks 3.309       Low
cufflinks 8.741        
cufflinks 16.573     High  
cufflinks 7.924        

0 Strain