Gene : Medtr4g075560 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE Description:  chalcone synthase family protein
Genomic Order:  3573 Name:  ? Medtr4g075560
Secondary Identifier:  ? PAC:31107697
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g075560 0.5kb upstream 0.5kb upstream 1780 true chr4: 28872166-28873945 Medicago truncatula
Medtr4g075560 0.5kb upstream 0.5kb upstream 500 false chr4: 28873446-28873945 Medicago truncatula
Medtr4g075560 0.5kb downstream 0.5kb downstream 1780 true chr4: 28871666-28873445 Medicago truncatula
Medtr4g075560 0.5kb downstream 0.5kb downstream 500 false chr4: 28871666-28872165 Medicago truncatula
Medtr4g075560 1.0kb upstream 1.0kb upstream 2280 true chr4: 28872166-28874445 Medicago truncatula
Medtr4g075560 1.0kb upstream 1.0kb upstream 1000 false chr4: 28873446-28874445 Medicago truncatula
Medtr4g075560 1.0kb downstream 1.0kb downstream 2280 true chr4: 28871166-28873445 Medicago truncatula
Medtr4g075560 1.0kb downstream 1.0kb downstream 1000 false chr4: 28871166-28872165 Medicago truncatula
Medtr4g075560 2.0kb upstream 2.0kb upstream 3280 true chr4: 28872166-28875445 Medicago truncatula
Medtr4g075560 2.0kb upstream 2.0kb upstream 2000 false chr4: 28873446-28875445 Medicago truncatula
Medtr4g075560 2.0kb downstream 2.0kb downstream 3280 true chr4: 28870166-28873445 Medicago truncatula
Medtr4g075560 2.0kb downstream 2.0kb downstream 2000 false chr4: 28870166-28872165 Medicago truncatula
Medtr4g075560 5.0kb upstream 5.0kb upstream 6280 true chr4: 28872166-28878445 Medicago truncatula
Medtr4g075560 5.0kb upstream 5.0kb upstream 5000 false chr4: 28873446-28878445 Medicago truncatula
Medtr4g075560 5.0kb downstream 5.0kb downstream 6280 true chr4: 28867166-28873445 Medicago truncatula
Medtr4g075560 5.0kb downstream 5.0kb downstream 5000 false chr4: 28867166-28872165 Medicago truncatula
Medtr4g075560 10.0kb upstream 10.0kb upstream 11280 true chr4: 28872166-28883445 Medicago truncatula
Medtr4g075560 10.0kb upstream 10.0kb upstream 10000 false chr4: 28873446-28883445 Medicago truncatula
Medtr4g075560 10.0kb downstream 10.0kb downstream 11280 true chr4: 28862166-28873445 Medicago truncatula
Medtr4g075560 10.0kb downstream 10.0kb downstream 10000 false chr4: 28862166-28872165 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300331 5265 Fabidae View MSA
124063959 5270 Rosid View MSA
123736714 5271 Pentapetalae View MSA
122788702 5272 Eudicot View MSA
122042999 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain