Gene : Medtr4g077700 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11946:SF86 - METHIONINE--TRNA LIGASE, CYTOPLASMIC Description:  methionine-tRNA ligase, putative
Genomic Order:  3696 Name:  ? Medtr4g077700
Secondary Identifier:  ? PAC:31108260
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g077700 0.5kb upstream 0.5kb upstream 12811 true chr4: 29762938-29775748 Medicago truncatula
Medtr4g077700 0.5kb upstream 0.5kb upstream 500 false chr4: 29775249-29775748 Medicago truncatula
Medtr4g077700 0.5kb downstream 0.5kb downstream 12811 true chr4: 29762438-29775248 Medicago truncatula
Medtr4g077700 0.5kb downstream 0.5kb downstream 500 false chr4: 29762438-29762937 Medicago truncatula
Medtr4g077700 1.0kb upstream 1.0kb upstream 13311 true chr4: 29762938-29776248 Medicago truncatula
Medtr4g077700 1.0kb upstream 1.0kb upstream 1000 false chr4: 29775249-29776248 Medicago truncatula
Medtr4g077700 1.0kb downstream 1.0kb downstream 13311 true chr4: 29761938-29775248 Medicago truncatula
Medtr4g077700 1.0kb downstream 1.0kb downstream 1000 false chr4: 29761938-29762937 Medicago truncatula
Medtr4g077700 2.0kb upstream 2.0kb upstream 14311 true chr4: 29762938-29777248 Medicago truncatula
Medtr4g077700 2.0kb upstream 2.0kb upstream 2000 false chr4: 29775249-29777248 Medicago truncatula
Medtr4g077700 2.0kb downstream 2.0kb downstream 14311 true chr4: 29760938-29775248 Medicago truncatula
Medtr4g077700 2.0kb downstream 2.0kb downstream 2000 false chr4: 29760938-29762937 Medicago truncatula
Medtr4g077700 5.0kb upstream 5.0kb upstream 17311 true chr4: 29762938-29780248 Medicago truncatula
Medtr4g077700 5.0kb upstream 5.0kb upstream 5000 false chr4: 29775249-29780248 Medicago truncatula
Medtr4g077700 5.0kb downstream 5.0kb downstream 17311 true chr4: 29757938-29775248 Medicago truncatula
Medtr4g077700 5.0kb downstream 5.0kb downstream 5000 false chr4: 29757938-29762937 Medicago truncatula
Medtr4g077700 10.0kb upstream 10.0kb upstream 22311 true chr4: 29762938-29785248 Medicago truncatula
Medtr4g077700 10.0kb upstream 10.0kb upstream 10000 false chr4: 29775249-29785248 Medicago truncatula
Medtr4g077700 10.0kb downstream 10.0kb downstream 22311 true chr4: 29752938-29775248 Medicago truncatula
Medtr4g077700 10.0kb downstream 10.0kb downstream 10000 false chr4: 29752938-29762937 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300512 5265 Fabidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.564        
cufflinks 4.264        
cufflinks 3.589        
cufflinks 2.938        
cufflinks 5.963       High
cufflinks 1.574       Low
cufflinks 4.365        
cufflinks 4.168        
cufflinks 4.816        

0 Strain