Gene : Medtr4g109540 M. truncatula Mt4.0v1
Defline:  (1 of 243) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  5769 Name:  ? Medtr4g109540
Secondary Identifier:  ? PAC:31110288
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g109540 0.5kb upstream 0.5kb upstream 4197 true chr4: 45523373-45527569 Medicago truncatula
Medtr4g109540 0.5kb upstream 0.5kb upstream 500 false chr4: 45527070-45527569 Medicago truncatula
Medtr4g109540 0.5kb downstream 0.5kb downstream 4197 true chr4: 45522873-45527069 Medicago truncatula
Medtr4g109540 0.5kb downstream 0.5kb downstream 500 false chr4: 45522873-45523372 Medicago truncatula
Medtr4g109540 1.0kb upstream 1.0kb upstream 4697 true chr4: 45523373-45528069 Medicago truncatula
Medtr4g109540 1.0kb upstream 1.0kb upstream 1000 false chr4: 45527070-45528069 Medicago truncatula
Medtr4g109540 1.0kb downstream 1.0kb downstream 4697 true chr4: 45522373-45527069 Medicago truncatula
Medtr4g109540 1.0kb downstream 1.0kb downstream 1000 false chr4: 45522373-45523372 Medicago truncatula
Medtr4g109540 2.0kb upstream 2.0kb upstream 5697 true chr4: 45523373-45529069 Medicago truncatula
Medtr4g109540 2.0kb upstream 2.0kb upstream 2000 false chr4: 45527070-45529069 Medicago truncatula
Medtr4g109540 2.0kb downstream 2.0kb downstream 5697 true chr4: 45521373-45527069 Medicago truncatula
Medtr4g109540 2.0kb downstream 2.0kb downstream 2000 false chr4: 45521373-45523372 Medicago truncatula
Medtr4g109540 5.0kb upstream 5.0kb upstream 8697 true chr4: 45523373-45532069 Medicago truncatula
Medtr4g109540 5.0kb upstream 5.0kb upstream 5000 false chr4: 45527070-45532069 Medicago truncatula
Medtr4g109540 5.0kb downstream 5.0kb downstream 8697 true chr4: 45518373-45527069 Medicago truncatula
Medtr4g109540 5.0kb downstream 5.0kb downstream 5000 false chr4: 45518373-45523372 Medicago truncatula
Medtr4g109540 10.0kb upstream 10.0kb upstream 13697 true chr4: 45523373-45537069 Medicago truncatula
Medtr4g109540 10.0kb upstream 10.0kb upstream 10000 false chr4: 45527070-45537069 Medicago truncatula
Medtr4g109540 10.0kb downstream 10.0kb downstream 13697 true chr4: 45513373-45527069 Medicago truncatula
Medtr4g109540 10.0kb downstream 10.0kb downstream 10000 false chr4: 45513373-45523372 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310941 5265 Fabidae View MSA
124065673 5270 Rosid View MSA
123747878 5271 Pentapetalae View MSA
122791665 5272 Eudicot View MSA
122044174 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121348177 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.673        
cufflinks 4.914        
cufflinks 7.88        
cufflinks 3.372        
cufflinks 15.359     High High
cufflinks 0.805       Low
cufflinks 2.639        
cufflinks 7.296        
cufflinks 4.437        

0 Strain