Gene : Medtr4g111945 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11361:SF35 - DNA MISMATCH REPAIR PROTEIN MSH2 Description:  DNA mismatch repair MSH3-like protein
Genomic Order:  5876 Name:  ? Medtr4g111945
Secondary Identifier:  ? PAC:31112915
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g111945 0.5kb upstream 0.5kb upstream 11361 true chr4: 46288809-46300169 Medicago truncatula
Medtr4g111945 0.5kb upstream 0.5kb upstream 500 false chr4: 46288809-46289308 Medicago truncatula
Medtr4g111945 0.5kb downstream 0.5kb downstream 11361 true chr4: 46289309-46300669 Medicago truncatula
Medtr4g111945 0.5kb downstream 0.5kb downstream 500 false chr4: 46300170-46300669 Medicago truncatula
Medtr4g111945 1.0kb upstream 1.0kb upstream 11861 true chr4: 46288309-46300169 Medicago truncatula
Medtr4g111945 1.0kb upstream 1.0kb upstream 1000 false chr4: 46288309-46289308 Medicago truncatula
Medtr4g111945 1.0kb downstream 1.0kb downstream 11861 true chr4: 46289309-46301169 Medicago truncatula
Medtr4g111945 1.0kb downstream 1.0kb downstream 1000 false chr4: 46300170-46301169 Medicago truncatula
Medtr4g111945 2.0kb upstream 2.0kb upstream 12861 true chr4: 46287309-46300169 Medicago truncatula
Medtr4g111945 2.0kb upstream 2.0kb upstream 2000 false chr4: 46287309-46289308 Medicago truncatula
Medtr4g111945 2.0kb downstream 2.0kb downstream 12861 true chr4: 46289309-46302169 Medicago truncatula
Medtr4g111945 2.0kb downstream 2.0kb downstream 2000 false chr4: 46300170-46302169 Medicago truncatula
Medtr4g111945 5.0kb upstream 5.0kb upstream 15861 true chr4: 46284309-46300169 Medicago truncatula
Medtr4g111945 5.0kb upstream 5.0kb upstream 5000 false chr4: 46284309-46289308 Medicago truncatula
Medtr4g111945 5.0kb downstream 5.0kb downstream 15861 true chr4: 46289309-46305169 Medicago truncatula
Medtr4g111945 5.0kb downstream 5.0kb downstream 5000 false chr4: 46300170-46305169 Medicago truncatula
Medtr4g111945 10.0kb upstream 10.0kb upstream 20861 true chr4: 46279309-46300169 Medicago truncatula
Medtr4g111945 10.0kb upstream 10.0kb upstream 10000 false chr4: 46279309-46289308 Medicago truncatula
Medtr4g111945 10.0kb downstream 10.0kb downstream 20861 true chr4: 46289309-46310169 Medicago truncatula
Medtr4g111945 10.0kb downstream 10.0kb downstream 10000 false chr4: 46300170-46310169 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303400 5265 Fabidae View MSA
124060647 5270 Rosid View MSA
123740546 5271 Pentapetalae View MSA
122786206 5272 Eudicot View MSA
122042672 5273 Angiosperm View MSA
121343804 5274 Embryophyte View MSA
123423885 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.434        
cufflinks 0.351        
cufflinks 0.355        
cufflinks 0.063     Low  
cufflinks 0.738        
cufflinks 0.006     Low Low
cufflinks 0.243        
cufflinks 0.39        
cufflinks 0.305        

0 Strain