Gene : Medtr4g112860 M. truncatula Mt4.0v1
Defline:  (1 of 13) PTHR33209:SF1 - SERINE PROTEASE SPPA, CHLOROPLASTIC Description:  signal peptide peptidase A (SppA) 36 kDa type protein
Genomic Order:  5812 Name:  ? Medtr4g112860
Secondary Identifier:  ? PAC:31110584
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g112860 0.5kb upstream 0.5kb upstream 8660 true chr4: 45876054-45884713 Medicago truncatula
Medtr4g112860 0.5kb upstream 0.5kb upstream 500 false chr4: 45884214-45884713 Medicago truncatula
Medtr4g112860 0.5kb downstream 0.5kb downstream 8660 true chr4: 45875554-45884213 Medicago truncatula
Medtr4g112860 0.5kb downstream 0.5kb downstream 500 false chr4: 45875554-45876053 Medicago truncatula
Medtr4g112860 1.0kb upstream 1.0kb upstream 9160 true chr4: 45876054-45885213 Medicago truncatula
Medtr4g112860 1.0kb upstream 1.0kb upstream 1000 false chr4: 45884214-45885213 Medicago truncatula
Medtr4g112860 1.0kb downstream 1.0kb downstream 9160 true chr4: 45875054-45884213 Medicago truncatula
Medtr4g112860 1.0kb downstream 1.0kb downstream 1000 false chr4: 45875054-45876053 Medicago truncatula
Medtr4g112860 2.0kb upstream 2.0kb upstream 10160 true chr4: 45876054-45886213 Medicago truncatula
Medtr4g112860 2.0kb upstream 2.0kb upstream 2000 false chr4: 45884214-45886213 Medicago truncatula
Medtr4g112860 2.0kb downstream 2.0kb downstream 10160 true chr4: 45874054-45884213 Medicago truncatula
Medtr4g112860 2.0kb downstream 2.0kb downstream 2000 false chr4: 45874054-45876053 Medicago truncatula
Medtr4g112860 5.0kb upstream 5.0kb upstream 13160 true chr4: 45876054-45889213 Medicago truncatula
Medtr4g112860 5.0kb upstream 5.0kb upstream 5000 false chr4: 45884214-45889213 Medicago truncatula
Medtr4g112860 5.0kb downstream 5.0kb downstream 13160 true chr4: 45871054-45884213 Medicago truncatula
Medtr4g112860 5.0kb downstream 5.0kb downstream 5000 false chr4: 45871054-45876053 Medicago truncatula
Medtr4g112860 10.0kb upstream 10.0kb upstream 18160 true chr4: 45876054-45894213 Medicago truncatula
Medtr4g112860 10.0kb upstream 10.0kb upstream 10000 false chr4: 45884214-45894213 Medicago truncatula
Medtr4g112860 10.0kb downstream 10.0kb downstream 18160 true chr4: 45866054-45884213 Medicago truncatula
Medtr4g112860 10.0kb downstream 10.0kb downstream 10000 false chr4: 45866054-45876053 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297022 5265 Fabidae View MSA
124067655 5270 Rosid View MSA
123738820 5271 Pentapetalae View MSA
122785684 5272 Eudicot View MSA
122045424 5273 Angiosperm View MSA
121344928 5274 Embryophyte View MSA
123424112 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.316        
cufflinks 0.265        
cufflinks 0.294        
cufflinks 0.084       Low
cufflinks 0.349        
cufflinks 0.048     Low Low
cufflinks 0.181        
cufflinks 0.26        
cufflinks 0.185        

0 Strain