Gene : Medtr4g112680 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10947 - PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 Description:  phenylalanyl-tRNA synthetase beta chain
Genomic Order:  5821 Name:  ? Medtr4g112680
Secondary Identifier:  ? PAC:31112184
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g112680 0.5kb upstream 0.5kb upstream 9057 true chr4: 45941204-45950260 Medicago truncatula
Medtr4g112680 0.5kb upstream 0.5kb upstream 500 false chr4: 45941204-45941703 Medicago truncatula
Medtr4g112680 0.5kb downstream 0.5kb downstream 9057 true chr4: 45941704-45950760 Medicago truncatula
Medtr4g112680 0.5kb downstream 0.5kb downstream 500 false chr4: 45950261-45950760 Medicago truncatula
Medtr4g112680 1.0kb upstream 1.0kb upstream 9557 true chr4: 45940704-45950260 Medicago truncatula
Medtr4g112680 1.0kb upstream 1.0kb upstream 1000 false chr4: 45940704-45941703 Medicago truncatula
Medtr4g112680 1.0kb downstream 1.0kb downstream 9557 true chr4: 45941704-45951260 Medicago truncatula
Medtr4g112680 1.0kb downstream 1.0kb downstream 1000 false chr4: 45950261-45951260 Medicago truncatula
Medtr4g112680 2.0kb upstream 2.0kb upstream 10557 true chr4: 45939704-45950260 Medicago truncatula
Medtr4g112680 2.0kb upstream 2.0kb upstream 2000 false chr4: 45939704-45941703 Medicago truncatula
Medtr4g112680 2.0kb downstream 2.0kb downstream 10557 true chr4: 45941704-45952260 Medicago truncatula
Medtr4g112680 2.0kb downstream 2.0kb downstream 2000 false chr4: 45950261-45952260 Medicago truncatula
Medtr4g112680 5.0kb upstream 5.0kb upstream 13557 true chr4: 45936704-45950260 Medicago truncatula
Medtr4g112680 5.0kb upstream 5.0kb upstream 5000 false chr4: 45936704-45941703 Medicago truncatula
Medtr4g112680 5.0kb downstream 5.0kb downstream 13557 true chr4: 45941704-45955260 Medicago truncatula
Medtr4g112680 5.0kb downstream 5.0kb downstream 5000 false chr4: 45950261-45955260 Medicago truncatula
Medtr4g112680 10.0kb upstream 10.0kb upstream 18557 true chr4: 45931704-45950260 Medicago truncatula
Medtr4g112680 10.0kb upstream 10.0kb upstream 10000 false chr4: 45931704-45941703 Medicago truncatula
Medtr4g112680 10.0kb downstream 10.0kb downstream 18557 true chr4: 45941704-45960260 Medicago truncatula
Medtr4g112680 10.0kb downstream 10.0kb downstream 10000 false chr4: 45950261-45960260 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302005 5265 Fabidae View MSA
124062601 5270 Rosid View MSA
123738962 5271 Pentapetalae View MSA
122792851 5272 Eudicot View MSA
122042437 5273 Angiosperm View MSA
121345306 5274 Embryophyte View MSA
123425015 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.21        
cufflinks 0.932        
cufflinks 0.768        
cufflinks 0.477       Low
cufflinks 1.07        
cufflinks 0.483       Low
cufflinks 1.101        
cufflinks 0.766        
cufflinks 1.206        

0 Strain