Gene : Medtr4g115320 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR15131 - SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1 Description:  small nuclear RNA activating complex (SNAPc), subunit SNAP43
Genomic Order:  6046 Name:  ? Medtr4g115320
Secondary Identifier:  ? PAC:31110061
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g115320 0.5kb upstream 0.5kb upstream 5384 true chr4: 47607368-47612751 Medicago truncatula
Medtr4g115320 0.5kb upstream 0.5kb upstream 500 false chr4: 47607368-47607867 Medicago truncatula
Medtr4g115320 0.5kb downstream 0.5kb downstream 5384 true chr4: 47607868-47613251 Medicago truncatula
Medtr4g115320 0.5kb downstream 0.5kb downstream 500 false chr4: 47612752-47613251 Medicago truncatula
Medtr4g115320 1.0kb upstream 1.0kb upstream 5884 true chr4: 47606868-47612751 Medicago truncatula
Medtr4g115320 1.0kb upstream 1.0kb upstream 1000 false chr4: 47606868-47607867 Medicago truncatula
Medtr4g115320 1.0kb downstream 1.0kb downstream 5884 true chr4: 47607868-47613751 Medicago truncatula
Medtr4g115320 1.0kb downstream 1.0kb downstream 1000 false chr4: 47612752-47613751 Medicago truncatula
Medtr4g115320 2.0kb upstream 2.0kb upstream 6884 true chr4: 47605868-47612751 Medicago truncatula
Medtr4g115320 2.0kb upstream 2.0kb upstream 2000 false chr4: 47605868-47607867 Medicago truncatula
Medtr4g115320 2.0kb downstream 2.0kb downstream 6884 true chr4: 47607868-47614751 Medicago truncatula
Medtr4g115320 2.0kb downstream 2.0kb downstream 2000 false chr4: 47612752-47614751 Medicago truncatula
Medtr4g115320 5.0kb upstream 5.0kb upstream 9884 true chr4: 47602868-47612751 Medicago truncatula
Medtr4g115320 5.0kb upstream 5.0kb upstream 5000 false chr4: 47602868-47607867 Medicago truncatula
Medtr4g115320 5.0kb downstream 5.0kb downstream 9884 true chr4: 47607868-47617751 Medicago truncatula
Medtr4g115320 5.0kb downstream 5.0kb downstream 5000 false chr4: 47612752-47617751 Medicago truncatula
Medtr4g115320 10.0kb upstream 10.0kb upstream 14884 true chr4: 47597868-47612751 Medicago truncatula
Medtr4g115320 10.0kb upstream 10.0kb upstream 10000 false chr4: 47597868-47607867 Medicago truncatula
Medtr4g115320 10.0kb downstream 10.0kb downstream 14884 true chr4: 47607868-47622751 Medicago truncatula
Medtr4g115320 10.0kb downstream 10.0kb downstream 10000 false chr4: 47612752-47622751 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300091 5265 Fabidae View MSA
124060521 5270 Rosid View MSA
123737660 5271 Pentapetalae View MSA
122797190 5272 Eudicot View MSA
122043179 5273 Angiosperm View MSA
121344742 5274 Embryophyte View MSA
123426038 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.296       High
cufflinks 0.169        
cufflinks 0.137        
cufflinks 0.05     Low Low
cufflinks 0.286       High
cufflinks 0.219        
cufflinks 0.125        
cufflinks 0.174        
cufflinks 0.084     Low Low

0 Strain