Gene : Medtr4g115980 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11811:SF36 - AROGENATE DEHYDROGENASE 1, CHLOROPLASTIC Description:  prephenate dehydrogenase
Genomic Order:  6094 Name:  ? Medtr4g115980
Secondary Identifier:  ? PAC:31111004
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-3461 Medicago truncatula pathologic  
Mtruncatula PWY-3481 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g115980 0.5kb upstream 0.5kb upstream 3481 true chr4: 47944231-47947711 Medicago truncatula
Medtr4g115980 0.5kb upstream 0.5kb upstream 500 false chr4: 47944231-47944730 Medicago truncatula
Medtr4g115980 0.5kb downstream 0.5kb downstream 3481 true chr4: 47944731-47948211 Medicago truncatula
Medtr4g115980 0.5kb downstream 0.5kb downstream 500 false chr4: 47947712-47948211 Medicago truncatula
Medtr4g115980 1.0kb upstream 1.0kb upstream 3981 true chr4: 47943731-47947711 Medicago truncatula
Medtr4g115980 1.0kb upstream 1.0kb upstream 1000 false chr4: 47943731-47944730 Medicago truncatula
Medtr4g115980 1.0kb downstream 1.0kb downstream 3981 true chr4: 47944731-47948711 Medicago truncatula
Medtr4g115980 1.0kb downstream 1.0kb downstream 1000 false chr4: 47947712-47948711 Medicago truncatula
Medtr4g115980 2.0kb upstream 2.0kb upstream 4981 true chr4: 47942731-47947711 Medicago truncatula
Medtr4g115980 2.0kb upstream 2.0kb upstream 2000 false chr4: 47942731-47944730 Medicago truncatula
Medtr4g115980 2.0kb downstream 2.0kb downstream 4981 true chr4: 47944731-47949711 Medicago truncatula
Medtr4g115980 2.0kb downstream 2.0kb downstream 2000 false chr4: 47947712-47949711 Medicago truncatula
Medtr4g115980 5.0kb upstream 5.0kb upstream 7981 true chr4: 47939731-47947711 Medicago truncatula
Medtr4g115980 5.0kb upstream 5.0kb upstream 5000 false chr4: 47939731-47944730 Medicago truncatula
Medtr4g115980 5.0kb downstream 5.0kb downstream 7981 true chr4: 47944731-47952711 Medicago truncatula
Medtr4g115980 5.0kb downstream 5.0kb downstream 5000 false chr4: 47947712-47952711 Medicago truncatula
Medtr4g115980 10.0kb upstream 10.0kb upstream 12981 true chr4: 47934731-47947711 Medicago truncatula
Medtr4g115980 10.0kb upstream 10.0kb upstream 10000 false chr4: 47934731-47944730 Medicago truncatula
Medtr4g115980 10.0kb downstream 10.0kb downstream 12981 true chr4: 47944731-47957711 Medicago truncatula
Medtr4g115980 10.0kb downstream 10.0kb downstream 10000 false chr4: 47947712-47957711 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121691084 5273 Angiosperm View MSA
122314160 5265 Fabidae View MSA
124038185 5270 Rosid View MSA
123646805 5271 Pentapetalae View MSA
122680847 5272 Eudicot View MSA
121351682 5274 Embryophyte View MSA
123427304 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.127       High
cufflinks 3.056        
cufflinks 3.945        
cufflinks 2.647        
cufflinks 4.659        
cufflinks 1.57       Low
cufflinks 4.13        
cufflinks 3.042        
cufflinks 4.969        

0 Strain